Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1102
         (419 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   1.1  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   2.4  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         22   3.2  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    22   3.2  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    22   3.2  
AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein pro...    21   7.5  
AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding pr...    21   7.5  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.4 bits (48), Expect = 1.1
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +1

Query: 265 GRGELYNGYSGREHRTSHPL 324
           GRG ++ G+  RE  + +PL
Sbjct: 53  GRGTIFEGHDDREQPSVYPL 72


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 22.2 bits (45), Expect = 2.4
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +2

Query: 308 EPHIHWKPQLIDGI 349
           + H+ WKP   DGI
Sbjct: 101 DSHLSWKPSDFDGI 114


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 3.2
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = +2

Query: 140 GTTGRLLRGE 169
           GTTG +LRGE
Sbjct: 16  GTTGNILRGE 25


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 3.2
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = +2

Query: 140 GTTGRLLRGE 169
           GTTG +LRGE
Sbjct: 16  GTTGNILRGE 25


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 3.2
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = +2

Query: 140 GTTGRLLRGE 169
           GTTG +LRGE
Sbjct: 16  GTTGNILRGE 25


>AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein
           protein.
          Length = 105

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 14/45 (31%), Positives = 18/45 (40%)
 Frame = +2

Query: 185 QPRPSFGQRKTGTRRGILFRASERDHQDAANSIMGIVVENIEPHI 319
           QPRPSF   K G      F +S  D+       M +  E   P +
Sbjct: 32  QPRPSFELSKNGDE--WTFTSSSGDNTYTKTFKMNVPFEETLPSL 74


>AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding
           protein protein.
          Length = 135

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 14/45 (31%), Positives = 18/45 (40%)
 Frame = +2

Query: 185 QPRPSFGQRKTGTRRGILFRASERDHQDAANSIMGIVVENIEPHI 319
           QPRPSF   K G      F +S  D+       M +  E   P +
Sbjct: 34  QPRPSFELSKNGDE--WTFTSSSGDNTYTKTFKMNVPFEETLPSL 76


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,271
Number of Sequences: 438
Number of extensions: 1646
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10750329
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)