Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1102
         (419 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g01730.1 68414.m00092 expressed protein                             28   2.2  
At2g38330.1 68415.m04709 MATE efflux family protein low similari...    28   3.0  
At3g49307.1 68416.m05390 Expressed protein                             27   5.2  
At1g70320.1 68414.m08090 ubiquitin-protein ligase 2 (UPL2) nearl...    26   9.0  

>At1g01730.1 68414.m00092 expressed protein
          Length = 224

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 247 IGTRSPGRGELYNGYSGREHRTSHPL 324
           I +  PG   +Y+G S  E+R+SHP+
Sbjct: 186 ITSGGPGTEPVYSGMSKEEYRSSHPI 211


>At2g38330.1 68415.m04709 MATE efflux family protein low similarity
           to enhanced disease susceptibility 5 [Arabidopsis
           thaliana] GI:16589070; contains Pfam profile PF01554:
           Uncharacterized membrane protein family
          Length = 521

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 8/82 (9%)
 Frame = +2

Query: 179 PHQPRPSFGQRKTGTRRGILFRASERDHQDAANSIM--------GIVVENIEPHIHWKPQ 334
           PH+    FG   +  RR I+ ++S RD   A ++           +  +N   H H KP 
Sbjct: 12  PHRSPSRFGNPNSSIRRTIVCKSSPRDESPAVSTSSQRPEKQQNPLTSQNKPDHDH-KPD 70

Query: 335 LIDGILKYGDXVHTMSLPRASA 400
              GI K G  + +++LP A A
Sbjct: 71  --PGIGKIGMEIMSIALPAALA 90


>At3g49307.1 68416.m05390 Expressed protein
          Length = 76

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = +2

Query: 149 GRLLRGEVHGPHQPRP 196
           GR   G  HGPH PRP
Sbjct: 54  GRRYPGRPHGPHAPRP 69


>At1g70320.1 68414.m08090 ubiquitin-protein ligase 2 (UPL2) nearly
            identical to ubiquitin-protein ligase 2 [Arabidopsis
            thaliana] GI:7108523; E3, HECT-domain protein family;
            similar to ubiquitin-protein ligase 2 GI:7108523 from
            [Arabidopsis thaliana]
          Length = 3658

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = +2

Query: 164  GEVHGPHQPRPSFGQRKTGTRRGILFRASERDHQDAANSIMGIVVENIE 310
            G  H  +  R   G R TG  RG+     +RD   +A+   G+ V+ IE
Sbjct: 2723 GSSHRLNNRRNGLGYRLTGMERGVGVTIGQRDVSSSAD---GLKVKEIE 2768


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,516,669
Number of Sequences: 28952
Number of extensions: 120393
Number of successful extensions: 346
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 342
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 346
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 645327280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)