Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS1101
(329 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 78 3e-16
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 50 7e-08
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 41 6e-05
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 39 2e-04
SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3 s... 26 1.3
SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|ch... 26 1.7
SPAC27D7.09c |||But2 family protein|Schizosaccharomyces pombe|ch... 26 1.7
SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomy... 25 2.2
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc... 25 3.9
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc... 25 3.9
SPCC16A11.01 ||SPCC63.15|conserved fungal protein|Schizosaccharo... 24 5.2
SPAC23D3.03c |||GTPase activating protein |Schizosaccharomyces p... 24 6.8
SPAC14C4.04 |B22918-2||hypothetical protein|Schizosaccharomyces ... 24 6.8
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma... 23 9.0
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 78.2 bits (184), Expect = 3e-16
Identities = 32/47 (68%), Positives = 38/47 (80%)
Frame = +1
Query: 115 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSDLQLERI 255
MREIVHIQAGQCGNQ+GA FW I+DEHG+D+ G Y G S+ Q ER+
Sbjct: 1 MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHGTSEAQHERL 47
Score = 44.4 bits (100), Expect = 5e-06
Identities = 18/21 (85%), Positives = 21/21 (100%)
Frame = +3
Query: 255 NVYYNEASGGKYVPRAVMVDL 317
NVY+NEA+GGKYVPRAV+VDL
Sbjct: 48 NVYFNEAAGGKYVPRAVLVDL 68
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 50.4 bits (115), Expect = 7e-08
Identities = 20/33 (60%), Positives = 26/33 (78%)
Frame = +1
Query: 118 REIVHIQAGQCGNQIGAKFWEVISDEHGIDATG 216
REI+ +QAGQCGNQIG++FW+ + EHGI G
Sbjct: 3 REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDG 35
Score = 26.2 bits (55), Expect = 1.3
Identities = 7/21 (33%), Positives = 17/21 (80%)
Frame = +3
Query: 255 NVYYNEASGGKYVPRAVMVDL 317
+V++ ++ +Y+PRA+++DL
Sbjct: 49 DVFFYQSDDTRYIPRAILIDL 69
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 40.7 bits (91), Expect = 6e-05
Identities = 18/34 (52%), Positives = 20/34 (58%)
Frame = +1
Query: 115 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATG 216
MREI+ I GQ G QIG WE+ EHGI G
Sbjct: 1 MREIISIHVGQAGTQIGNACWELYCLEHGIQPNG 34
Score = 29.1 bits (62), Expect = 0.18
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +3
Query: 255 NVYYNEASGGKYVPRAVMVDL 317
+ +++E GKYVPR++ VDL
Sbjct: 50 STFFSETGQGKYVPRSIYVDL 70
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 38.7 bits (86), Expect = 2e-04
Identities = 17/42 (40%), Positives = 25/42 (59%)
Frame = +1
Query: 115 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSDL 240
MRE++ + GQ G QIG WE+ EHGI G + +S++
Sbjct: 1 MREVISVHVGQAGVQIGNACWELYCLEHGIGPDGFPTENSEV 42
Score = 27.1 bits (57), Expect = 0.73
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = +3
Query: 261 YYNEASGGKYVPRAVMVDL 317
+++E GK+VPR++ VDL
Sbjct: 56 FFSETGQGKFVPRSIYVDL 74
>SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3
subunit Alp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 821
Score = 26.2 bits (55), Expect = 1.3
Identities = 10/35 (28%), Positives = 18/35 (51%)
Frame = -3
Query: 183 YFPELCSDLIPALTRLDVDDFPHDCTKNLEPPESN 79
+F E+ + P +LD+DD + + P E+N
Sbjct: 36 FFQEIIHSISPDTFQLDIDDILYKIYSKIPPEENN 70
>SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 383
Score = 25.8 bits (54), Expect = 1.7
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = +2
Query: 80 FDSGGSKFLVQS*GKSSTSRRVNAGIRSEQSSGK*SRTSTALTPRVLTAATPT 238
F S S S +STS RV++ ++ SSG + T+ + V +AT T
Sbjct: 165 FVSPSSSSSSSSSAATSTSTRVSSSAKASTSSGAIAYTTKCVVVPVTASATAT 217
>SPAC27D7.09c |||But2 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 383
Score = 25.8 bits (54), Expect = 1.7
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = +2
Query: 80 FDSGGSKFLVQS*GKSSTSRRVNAGIRSEQSSGK*SRTSTALTPRVLTAATPT 238
F S S S +STS RV++ ++ SSG + T+ + V +AT T
Sbjct: 165 FVSPSSSSSSSSSAATSTSTRVSSSAKASTSSGAIAYTTKCVVVPVTASATAT 217
>SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 543
Score = 25.4 bits (53), Expect = 2.2
Identities = 7/21 (33%), Positives = 14/21 (66%)
Frame = -1
Query: 140 AWMWTISLMIALKIWNPPNRI 78
AW+W ++LM+ + PN++
Sbjct: 458 AWLWFMALMLLFPSYQNPNKV 478
>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
Apc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1458
Score = 24.6 bits (51), Expect = 3.9
Identities = 16/58 (27%), Positives = 26/58 (44%)
Frame = -3
Query: 279 LKLRYSRHYAFKLQVGVAAVSTRGVNAVLVRDYFPELCSDLIPALTRLDVDDFPHDCT 106
++L SR + G+ + V + +Y P S+ + + RLDVD F H T
Sbjct: 599 VRLGISRKRCERYPFGILCIIFT-VLEIAAEEYSPNWESEELRLVNRLDVDSFLHPKT 655
>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1573
Score = 24.6 bits (51), Expect = 3.9
Identities = 14/48 (29%), Positives = 20/48 (41%)
Frame = +1
Query: 94 FQIFSAIMREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSD 237
F + S I I C + +W+V+ G+ TGA S SD
Sbjct: 807 FSVLSLICPSRTLIIDKACVEKTWPYWWDVLHQSFGVKLTGATSVASD 854
>SPCC16A11.01 ||SPCC63.15|conserved fungal
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 328
Score = 24.2 bits (50), Expect = 5.2
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = -1
Query: 155 FPH*PAWMWTISLMIALKIWNPPNR 81
FP MWTI L++ L +W+ ++
Sbjct: 25 FPLVSFLMWTIGLIVLLGLWSTQDK 49
>SPAC23D3.03c |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 472
Score = 23.8 bits (49), Expect = 6.8
Identities = 12/29 (41%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Frame = -1
Query: 119 LMIALKIWNPPN--RILNKHFREFDHVKK 39
L I W PP KH REF+ +KK
Sbjct: 132 LSIGRPSWLPPKSKEEEKKHMREFEQIKK 160
>SPAC14C4.04 |B22918-2||hypothetical protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 267
Score = 23.8 bits (49), Expect = 6.8
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +1
Query: 181 VISDEHGIDATGAYSGDSDLQLERIMSTI 267
V SDE A+G YSGD +L + + + +
Sbjct: 234 VYSDEKFFYASGRYSGDVELLCKALRNLV 262
>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
2|||Manual
Length = 918
Score = 23.4 bits (48), Expect = 9.0
Identities = 8/31 (25%), Positives = 18/31 (58%)
Frame = +1
Query: 181 VISDEHGIDATGAYSGDSDLQLERIMSTITK 273
++ +HG+D G + GDS ++ ++ +K
Sbjct: 281 IVMGDHGMDNKGNHGGDSFDEINSVLWMYSK 311
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,405,243
Number of Sequences: 5004
Number of extensions: 25916
Number of successful extensions: 79
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 91899990
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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