Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS1098
(399 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_40385| Best HMM Match : Kelch_1 (HMM E-Value=0) 31 0.46
SB_13053| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.80
SB_2676| Best HMM Match : Kelch_1 (HMM E-Value=0) 29 1.1
SB_13953| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.4
SB_29786| Best HMM Match : I-set (HMM E-Value=0) 29 1.8
SB_28350| Best HMM Match : BTB (HMM E-Value=1.1e-38) 29 1.8
SB_44086| Best HMM Match : BTB (HMM E-Value=1.8e-23) 29 1.8
SB_32554| Best HMM Match : BTB (HMM E-Value=2e-13) 29 1.8
SB_38405| Best HMM Match : BACK (HMM E-Value=0) 28 2.4
SB_18403| Best HMM Match : BACK (HMM E-Value=0) 28 2.4
SB_45209| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.2
SB_19151| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.3
SB_36561| Best HMM Match : BACK (HMM E-Value=1.4013e-45) 27 5.6
SB_23385| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.6
SB_35938| Best HMM Match : BTB (HMM E-Value=8.5e-24) 27 7.4
SB_55145| Best HMM Match : Kelch_1 (HMM E-Value=0) 27 7.4
SB_49953| Best HMM Match : BTB (HMM E-Value=2.9e-18) 26 9.8
SB_41867| Best HMM Match : F-box (HMM E-Value=4.5e-08) 26 9.8
SB_26836| Best HMM Match : BTB (HMM E-Value=1.1e-37) 26 9.8
SB_6593| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.8
>SB_40385| Best HMM Match : Kelch_1 (HMM E-Value=0)
Length = 823
Score = 30.7 bits (66), Expect = 0.46
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +2
Query: 248 IATHKLVLSVCSPYFQEMF 304
I H++VL+ CSPYF+ MF
Sbjct: 70 IHAHRVVLAACSPYFRAMF 88
>SB_13053| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 581
Score = 29.9 bits (64), Expect = 0.80
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = +2
Query: 248 IATHKLVLSVCSPYFQEMF 304
I +HKLVL+ SPYF+ MF
Sbjct: 44 IPSHKLVLAASSPYFRAMF 62
>SB_2676| Best HMM Match : Kelch_1 (HMM E-Value=0)
Length = 645
Score = 29.5 bits (63), Expect = 1.1
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +2
Query: 248 IATHKLVLSVCSPYFQEMF 304
I+ H++VLS CS YF MF
Sbjct: 43 ISAHRVVLSACSAYFDAMF 61
>SB_13953| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 439
Score = 29.1 bits (62), Expect = 1.4
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = +2
Query: 248 IATHKLVLSVCSPYFQEMF--KMXPTQHPIVF*RCSHSALRDLLQ 376
I HK VL+ SP F+ MF K+ T I CS + ++L+
Sbjct: 41 IPAHKYVLATSSPVFEAMFFGKLAETGFTIALPDCSAEGMLEMLR 85
>SB_29786| Best HMM Match : I-set (HMM E-Value=0)
Length = 6300
Score = 28.7 bits (61), Expect = 1.8
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +2
Query: 239 KGFIATHKLVLSVCSPYFQEMF 304
K FI HKL+L++ SP F MF
Sbjct: 2773 KYFIPGHKLILAISSPVFYAMF 2794
>SB_28350| Best HMM Match : BTB (HMM E-Value=1.1e-38)
Length = 518
Score = 28.7 bits (61), Expect = 1.8
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +2
Query: 248 IATHKLVLSVCSPYFQEM 301
I H++VL+ CSPYF+ M
Sbjct: 50 IKAHRVVLAACSPYFRAM 67
>SB_44086| Best HMM Match : BTB (HMM E-Value=1.8e-23)
Length = 417
Score = 28.7 bits (61), Expect = 1.8
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = +2
Query: 248 IATHKLVLSVCSPYFQEMF--KMXPTQHPIVF*RCSHSALRDLLQ 376
I H+ VLSV SP F+ MF M + I C AL ++L+
Sbjct: 43 IPAHRYVLSVSSPVFEAMFHGAMAESSREISLPDCYAEALSEMLR 87
>SB_32554| Best HMM Match : BTB (HMM E-Value=2e-13)
Length = 133
Score = 28.7 bits (61), Expect = 1.8
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = +2
Query: 248 IATHKLVLSVCSPYFQEMF--KMXPTQHPIVF*RCSHSALRDLLQ 376
I HK VL+ SP F+ MF K+ T I C + + ++L+
Sbjct: 10 IPAHKYVLATSSPVFEAMFFGKLAETSRNITLPDCFYEGVLEMLR 54
>SB_38405| Best HMM Match : BACK (HMM E-Value=0)
Length = 423
Score = 28.3 bits (60), Expect = 2.4
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +2
Query: 248 IATHKLVLSVCSPYFQEMF 304
I H+LVL+ CS YF MF
Sbjct: 53 IYAHRLVLAACSQYFHAMF 71
>SB_18403| Best HMM Match : BACK (HMM E-Value=0)
Length = 423
Score = 28.3 bits (60), Expect = 2.4
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +2
Query: 248 IATHKLVLSVCSPYFQEMF 304
I H+LVL+ CS YF MF
Sbjct: 53 IYAHRLVLAACSQYFHAMF 71
>SB_45209| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 995
Score = 27.9 bits (59), Expect = 3.2
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +1
Query: 124 MASDEQFSLCWNNFHANMSAGFHGL 198
M S E WN F N++AG+H L
Sbjct: 203 MMSYEGMQFDWNTFSVNLTAGYHQL 227
>SB_19151| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 613
Score = 27.5 bits (58), Expect = 4.3
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +2
Query: 248 IATHKLVLSVCSPYFQEMF 304
IA H+ VL+ SPYF+ MF
Sbjct: 94 IAVHRNVLAAVSPYFRAMF 112
>SB_36561| Best HMM Match : BACK (HMM E-Value=1.4013e-45)
Length = 554
Score = 27.1 bits (57), Expect = 5.6
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = +2
Query: 248 IATHKLVLSVCSPYFQEMF 304
I HKLVLS S YF+ MF
Sbjct: 38 IDAHKLVLSASSEYFRAMF 56
>SB_23385| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 37
Score = 27.1 bits (57), Expect = 5.6
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 270 YQYVLPIFKKCSKXIQHNIR*YFKDV 347
Y+YV+P+ K+C Q + R Y KD+
Sbjct: 8 YEYVVPVQKECLSYKQTDDRTYEKDI 33
>SB_35938| Best HMM Match : BTB (HMM E-Value=8.5e-24)
Length = 467
Score = 26.6 bits (56), Expect = 7.4
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = +2
Query: 257 HKLVLSVCSPYFQEMF 304
HK VLSV SP F+ MF
Sbjct: 46 HKFVLSVSSPVFEAMF 61
>SB_55145| Best HMM Match : Kelch_1 (HMM E-Value=0)
Length = 625
Score = 26.6 bits (56), Expect = 7.4
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +2
Query: 248 IATHKLVLSVCSPYFQEMF 304
I H++VL+ CS YF MF
Sbjct: 45 IRCHRVVLASCSAYFHSMF 63
>SB_49953| Best HMM Match : BTB (HMM E-Value=2.9e-18)
Length = 123
Score = 26.2 bits (55), Expect = 9.8
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = +2
Query: 248 IATHKLVLSVCSPYFQEMFKMXPTQH 325
++ H++VL+ SPYF+E+ + PT +
Sbjct: 52 LSAHRVVLAALSPYFREL--LLPTNN 75
>SB_41867| Best HMM Match : F-box (HMM E-Value=4.5e-08)
Length = 607
Score = 26.2 bits (55), Expect = 9.8
Identities = 18/48 (37%), Positives = 20/48 (41%)
Frame = +1
Query: 112 VVAIMASDEQFSLCWNNFHANMSAGFHGLLSRGDLVDVTLAAEGVYCN 255
V A + D F C N NMS L S DL + TL A CN
Sbjct: 202 VNATLLDDTVFDNCRNGHCLNMSITSLSLKSCNDLTNSTLNAFTYNCN 249
>SB_26836| Best HMM Match : BTB (HMM E-Value=1.1e-37)
Length = 521
Score = 26.2 bits (55), Expect = 9.8
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = +2
Query: 257 HKLVLSVCSPYFQEMF 304
HK+V+S SPYF+ +F
Sbjct: 48 HKIVVSASSPYFEVLF 63
>SB_6593| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 539
Score = 26.2 bits (55), Expect = 9.8
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +2
Query: 248 IATHKLVLSVCSPYFQEMF 304
I HK+VL+ SPYF+ +F
Sbjct: 59 IPCHKVVLAARSPYFRHLF 77
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,215,961
Number of Sequences: 59808
Number of extensions: 237434
Number of successful extensions: 497
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 497
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 703143849
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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