Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1097
         (389 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.09c |spk1||MAP kinase Spk1|Schizosaccharomyces pombe|ch...    25   3.1  
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb...    25   4.1  
SPAC22E12.07 |rna1||Ran GAP Rna1|Schizosaccharomyces pombe|chr 1...    25   5.5  
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos...    24   7.2  
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy...    24   7.2  
SPAC3C7.09 |set8||lysine methyltransferase Set8 |Schizosaccharom...    24   7.2  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    24   9.5  

>SPAC31G5.09c |spk1||MAP kinase Spk1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 372

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +2

Query: 38  VQTTVKKIHAYSXHLFALRTL 100
           ++  VKKIH ++  +F LRTL
Sbjct: 63  LKVAVKKIHPFNHPVFCLRTL 83


>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 952

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = -2

Query: 214  RRGFRLVPSNKSCKLHLHQVKLHKRDNKHTFQRVWRD 104
            +R  +L   N   KLH  ++    R+ +HT Q+ + D
Sbjct: 915  KRVRKLEKVNSELKLHCFELSERLREREHTLQQTFGD 951


>SPAC22E12.07 |rna1||Ran GAP Rna1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 386

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 8/14 (57%), Positives = 13/14 (92%)
 Frame = +3

Query: 318 PVRNIICVRNKIDN 359
           P+R+IIC RN+++N
Sbjct: 160 PLRSIICGRNRLEN 173


>SPAC328.04 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = -1

Query: 203 SPSSFE*ILQVAPSPSKVTQAGQQAHFPACLARCSVFLGQTS 78
           S SSFE   + AP  SKVT A  + + P      S    +TS
Sbjct: 133 SASSFERQNRTAPLQSKVTTASLKPNIPRTSMSSSPTASRTS 174


>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 606

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +1

Query: 76  PLVCPKNTEHRARHAGKCACCPACVTLLGEG 168
           P + PK+  HR   AG+       + LL +G
Sbjct: 336 PPLDPKSFSHRCGRAGRAGRAGVAIVLLNDG 366


>SPAC3C7.09 |set8||lysine methyltransferase Set8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 429

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
 Frame = +3

Query: 225 GASQMHQKSLTKLV*S-FSLAGKYKLAILLSRPVRNIICVRNKIDNNMHCSKYRNL 389
           GA Q+  K + K     FSL       +LL  P+ NIIC +        C K+ ++
Sbjct: 15  GAKQITIKKIRKKGNGIFSLNRYTSGTVLLEVPLENIICRKTVEQFRNSCDKFASI 70


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -3

Query: 345  SVHKLYFEQVVIEVLQAYIFLLMKTTT 265
            S HKL+ +  + ++L+A  F+L  T T
Sbjct: 1184 SHHKLWIQDRLHDILKALFFILKDTPT 1210


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,597,776
Number of Sequences: 5004
Number of extensions: 29904
Number of successful extensions: 70
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 128029482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)