Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1097
         (389 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68296-6|CAE17754.1|  195|Caenorhabditis elegans Hypothetical pr...    32   0.12 
U39644-2|AAA80360.2|  966|Caenorhabditis elegans Hypothetical pr...    31   0.22 
Z95559-9|CAI46625.1|  510|Caenorhabditis elegans Hypothetical pr...    30   0.67 
U00046-1|AAC47044.3| 2560|Caenorhabditis elegans Temporarily ass...    29   1.2  
AB206836-1|BAD91087.1| 2502|Caenorhabditis elegans Ten-1S protein.     29   1.2  
AB206835-1|BAD91086.1| 2684|Caenorhabditis elegans Ten-1L protein.     29   1.2  
U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical p...    28   2.0  
U28735-9|AAM69113.1| 1299|Caenorhabditis elegans Hypothetical pr...    28   2.0  
Z35604-6|CAA84681.1|  305|Caenorhabditis elegans Hypothetical pr...    28   2.7  
AF125964-6|AAD14755.2|  589|Caenorhabditis elegans Acid sphingom...    27   3.6  
X58982-1|CAA41731.1|  498|Caenorhabditis elegans degenerin protein.    27   6.2  
U58726-8|AAB00580.3|  768|Caenorhabditis elegans Mechanosensory ...    27   6.2  
U53669-1|AAC47265.1|  768|Caenorhabditis elegans MEC-4 protein.        27   6.2  
Z71181-9|CAD44140.1|  960|Caenorhabditis elegans Hypothetical pr...    26   8.2  
Z71178-15|CAD44087.1|  960|Caenorhabditis elegans Hypothetical p...    26   8.2  

>Z68296-6|CAE17754.1|  195|Caenorhabditis elegans Hypothetical
           protein C46C2.6a protein.
          Length = 195

 Score = 32.3 bits (70), Expect = 0.12
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = +1

Query: 85  CPKNTEHRARHAGKCACCPACVTLLGEGATC-KIYSKELGETPSAVCK-EPLKC 240
           CP + +   +H+G+CA   AC+     G  C K++S ++  T    CK +P+ C
Sbjct: 60  CPSDYDFIRQHSGRCADGTACIPDSSFGEPCIKLFSYQM--TKKFCCKSDPIDC 111


>U39644-2|AAA80360.2|  966|Caenorhabditis elegans Hypothetical
           protein T10E10.4 protein.
          Length = 966

 Score = 31.5 bits (68), Expect = 0.22
 Identities = 20/63 (31%), Positives = 25/63 (39%), Gaps = 1/63 (1%)
 Frame = +1

Query: 37  GTDYCEKNPCIQXPLVCPKNTEHRARHAGKCA-CCPACVTLLGEGATCKIYSKELGETPS 213
           G D C    C   P  CP N     R +G C  CCP   T +  G  C + S   G    
Sbjct: 530 GVD-CNNGACCPLP-TCPNNIASSQRCSGGCTNCCPVGQTCM-NGGCCDLPSCPSGGFAI 586

Query: 214 AVC 222
           ++C
Sbjct: 587 SMC 589


>Z95559-9|CAI46625.1|  510|Caenorhabditis elegans Hypothetical
           protein Y41E3.18 protein.
          Length = 510

 Score = 29.9 bits (64), Expect = 0.67
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +1

Query: 91  KNTEHRARHAGKCACCPACVTLLGEGA 171
           K T HR +H    ACCP C  ++   A
Sbjct: 147 KGTWHRVKHVVFVACCPPCCCIIQRSA 173


>U00046-1|AAC47044.3| 2560|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 152, isoform a protein.
          Length = 2560

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 17/63 (26%), Positives = 24/63 (38%), Gaps = 1/63 (1%)
 Frame = +1

Query: 37  GTDYCEKNPCIQXPLVCPKNTEHRARHA-GKCACCPACVTLLGEGATCKIYSKELGETPS 213
           GT   +++P +   LVC  N   R     GKC C P       + A C +     G    
Sbjct: 302 GTSGAKEHP-LASVLVCESNCNQRGECVHGKCHCAPGFTGRTCDEAVCPVVCSGNGVFSG 360

Query: 214 AVC 222
            +C
Sbjct: 361 GIC 363


>AB206836-1|BAD91087.1| 2502|Caenorhabditis elegans Ten-1S protein.
          Length = 2502

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 17/63 (26%), Positives = 24/63 (38%), Gaps = 1/63 (1%)
 Frame = +1

Query: 37  GTDYCEKNPCIQXPLVCPKNTEHRARHA-GKCACCPACVTLLGEGATCKIYSKELGETPS 213
           GT   +++P +   LVC  N   R     GKC C P       + A C +     G    
Sbjct: 244 GTSGAKEHP-LASVLVCESNCNQRGECVHGKCHCAPGFTGRTCDEAVCPVVCSGNGVFSG 302

Query: 214 AVC 222
            +C
Sbjct: 303 GIC 305


>AB206835-1|BAD91086.1| 2684|Caenorhabditis elegans Ten-1L protein.
          Length = 2684

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 17/63 (26%), Positives = 24/63 (38%), Gaps = 1/63 (1%)
 Frame = +1

Query: 37  GTDYCEKNPCIQXPLVCPKNTEHRARHA-GKCACCPACVTLLGEGATCKIYSKELGETPS 213
           GT   +++P +   LVC  N   R     GKC C P       + A C +     G    
Sbjct: 426 GTSGAKEHP-LASVLVCESNCNQRGECVHGKCHCAPGFTGRTCDEAVCPVVCSGNGVFSG 484

Query: 214 AVC 222
            +C
Sbjct: 485 GIC 487


>U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical
           protein F48E3.8a protein.
          Length = 2427

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 24/81 (29%), Positives = 34/81 (41%), Gaps = 2/81 (2%)
 Frame = +1

Query: 7   CVTAYGALVCGTDYCEKNPCIQXPLVCPKNTEHRARHAGKCACCPACVTLLGEGATCKIY 186
           C    GAL  GT     +  IQ  + CP    +  R AG       C+T+   G  C+ Y
Sbjct: 59  CQCVKGALNTGTTCIASSTAIQTSVACPAGQTY-IREAG------VCMTVQQPGEPCQ-Y 110

Query: 187 SKELGE-TPSAVC-KEPLKCI 243
           S++     P A C K   +C+
Sbjct: 111 SQQCSALEPGAYCLKMRCECV 131


>U28735-9|AAM69113.1| 1299|Caenorhabditis elegans Hypothetical
           protein F48E3.8b protein.
          Length = 1299

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 24/81 (29%), Positives = 34/81 (41%), Gaps = 2/81 (2%)
 Frame = +1

Query: 7   CVTAYGALVCGTDYCEKNPCIQXPLVCPKNTEHRARHAGKCACCPACVTLLGEGATCKIY 186
           C    GAL  GT     +  IQ  + CP    +  R AG       C+T+   G  C+ Y
Sbjct: 59  CQCVKGALNTGTTCIASSTAIQTSVACPAGQTY-IREAG------VCMTVQQPGEPCQ-Y 110

Query: 187 SKELGE-TPSAVC-KEPLKCI 243
           S++     P A C K   +C+
Sbjct: 111 SQQCSALEPGAYCLKMRCECV 131


>Z35604-6|CAA84681.1|  305|Caenorhabditis elegans Hypothetical
           protein ZK1058.6 protein.
          Length = 305

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +1

Query: 145 CVTLLGEGATCKIYSKELGETPSAVCKE 228
           CV   G+G+T  ++S  +G+  SA+C E
Sbjct: 137 CVWGQGDGSTMPVFSTSVGKIGSAICWE 164


>AF125964-6|AAD14755.2|  589|Caenorhabditis elegans Acid
           sphingomyelinase protein 3 protein.
          Length = 589

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = +1

Query: 223 KEPLKCIKRV*LSLCSRFH*QENISLQYFYHDLFEI*FVYGIKLIII 363
           K+  +C+  + + +C  FH ++N    +   D F   F+Y IK I++
Sbjct: 38  KKTEECVMEIAVFICETFHIEDNDVCNFIISD-FSDEFMYVIKQILV 83


>X58982-1|CAA41731.1|  498|Caenorhabditis elegans degenerin protein.
          Length = 498

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
 Frame = +1

Query: 85  CPKNTEHRARHAGKCACCPA--CVTLLGEGATCKIYSKELGETPS 213
           C K+ +    H   C C P+  CV   G+    +I++   G TP+
Sbjct: 82  CTKDNKTAKGHRSPCICAPSRFCVAYNGKTPPIEIWTYLQGGTPT 126


>U58726-8|AAB00580.3|  768|Caenorhabditis elegans Mechanosensory
           abnormality protein4 protein.
          Length = 768

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
 Frame = +1

Query: 85  CPKNTEHRARHAGKCACCPA--CVTLLGEGATCKIYSKELGETPS 213
           C K+ +    H   C C P+  CV   G+    +I++   G TP+
Sbjct: 352 CTKDNKTAKGHRSPCICAPSRFCVAYNGKTPPIEIWTYLQGGTPT 396


>U53669-1|AAC47265.1|  768|Caenorhabditis elegans MEC-4 protein.
          Length = 768

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
 Frame = +1

Query: 85  CPKNTEHRARHAGKCACCPA--CVTLLGEGATCKIYSKELGETPS 213
           C K+ +    H   C C P+  CV   G+    +I++   G TP+
Sbjct: 352 CTKDNKTAKGHRSPCICAPSRFCVAYNGKTPPIEIWTYLQGGTPT 396


>Z71181-9|CAD44140.1|  960|Caenorhabditis elegans Hypothetical
           protein B0024.14b protein.
          Length = 960

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 20/70 (28%), Positives = 28/70 (40%)
 Frame = +1

Query: 31  VCGTDYCEKNPCIQXPLVCPKNTEHRARHAGKCACCPACVTLLGEGATCKIYSKELGETP 210
           +CGT  C+K+ C       P  +        +C CC  C+  +GE  TC        + P
Sbjct: 26  LCGT--CDKDSC-------PDVSGCEQLKKDQCDCCEVCIRQIGE--TC--------DGP 66

Query: 211 SAVCKEPLKC 240
             VC   L C
Sbjct: 67  GLVCDSHLSC 76


>Z71178-15|CAD44087.1|  960|Caenorhabditis elegans Hypothetical
           protein B0024.14b protein.
          Length = 960

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 20/70 (28%), Positives = 28/70 (40%)
 Frame = +1

Query: 31  VCGTDYCEKNPCIQXPLVCPKNTEHRARHAGKCACCPACVTLLGEGATCKIYSKELGETP 210
           +CGT  C+K+ C       P  +        +C CC  C+  +GE  TC        + P
Sbjct: 26  LCGT--CDKDSC-------PDVSGCEQLKKDQCDCCEVCIRQIGE--TC--------DGP 66

Query: 211 SAVCKEPLKC 240
             VC   L C
Sbjct: 67  GLVCDSHLSC 76


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,088,960
Number of Sequences: 27780
Number of extensions: 181789
Number of successful extensions: 464
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 464
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 587646290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)