Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1097
         (389 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g78860.1 68414.m09192 curculin-like (mannose-binding) lectin ...    29   1.1  
At5g11620.1 68418.m01359 SWIM zinc finger family protein / mitog...    28   1.9  
At5g03700.1 68418.m00330 PAN domain-containing protein contains ...    27   5.9  
At1g29110.1 68414.m03563 cysteine proteinase, putative contains ...    27   5.9  
At5g05660.1 68418.m00622 zinc finger (NF-X1 type) family protein...    26   7.8  
At3g44320.1 68416.m04760 nitrilase 3 (NIT3) identical to SP|P460...    26   7.8  
At3g44310.2 68416.m04759 nitrilase 1 (NIT1) identical to SP|P329...    26   7.8  
At3g44310.1 68416.m04758 nitrilase 1 (NIT1) identical to SP|P329...    26   7.8  
At3g44300.1 68416.m04757 nitrilase 2 (NIT2) identical to SP|P329...    26   7.8  

>At1g78860.1 68414.m09192 curculin-like (mannose-binding) lectin
           family protein low similarity to Ser/Thr protein kinase
           [Zea mays] GI:2598067; contains Pfam profile PF01453:
           Lectin (probable mannose binding)
          Length = 443

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +1

Query: 121 GKCACCPACVTLLGEGATCKIYS 189
           G+C  CP+ + LLG   TCKI S
Sbjct: 330 GQCNACPSDIGLLGWDETCKIPS 352


>At5g11620.1 68418.m01359 SWIM zinc finger family protein /
           mitogen-activated protein kinase kinase kinase
           (MAPKKK)-related contains weak similarity to
           Swiss-Prot:P53349 mitogen-activated protein kinase
           kinase kinase 1 (MAPK/ERK kinase kinase 1, MEK kinase 1,
           MEKK 1) [Mus musculus]; contains Pfam profile PF04434:
           SWIM zinc finger
          Length = 273

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 166 GATCKIYSKELGETPSAVCKEPLKCIKRV 252
           GATC +Y+  L  TP+  C +  K  K +
Sbjct: 53  GATCNVYTVTLMATPTCTCPDRKKPCKHI 81


>At5g03700.1 68418.m00330 PAN domain-containing protein contains
           Pfam profile: PF00024 PAN domain
          Length = 482

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 13/25 (52%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
 Frame = -3

Query: 252 NSFDAFERLLTHSGGGFA-*FLRIN 181
           +S D+F+ LLT S G F+  FLR+N
Sbjct: 48  SSIDSFQPLLTDSNGNFSFGFLRVN 72


>At1g29110.1 68414.m03563 cysteine proteinase, putative contains
           similarity to cysteine protease SPCP1 GI:13491750 from
           [Ipomoea batatas]
          Length = 334

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 10/15 (66%), Positives = 14/15 (93%)
 Frame = -2

Query: 229 APYTQRRGFRLVPSN 185
           AP+TQ RGF++VPS+
Sbjct: 220 APHTQIRGFQMVPSH 234


>At5g05660.1 68418.m00622 zinc finger (NF-X1 type) family protein
           contains PF01422: NF-X1 type zinc finger
          Length = 912

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +1

Query: 79  LVCPKNTEHRARHAGKCACCP 141
           L C K+   R  HAG+C  CP
Sbjct: 301 LNCGKHVCERGCHAGECGLCP 321


>At3g44320.1 68416.m04760 nitrilase 3 (NIT3) identical to SP|P46010
           Nitrilase 3 (EC 3.5.5.1) {Arabidopsis thaliana}
          Length = 346

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +1

Query: 145 CVTLLGEGATCKIYSKELGETPSAVCKE 228
           C+   G+G+T  +Y   +G+  +A+C E
Sbjct: 161 CIWGQGDGSTIPVYDTPIGKIGAAICWE 188


>At3g44310.2 68416.m04759 nitrilase 1 (NIT1) identical to SP|P32961
           Nitrilase 1 (EC 3.5.5.1) {Arabidopsis thaliana}
          Length = 224

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +1

Query: 145 CVTLLGEGATCKIYSKELGETPSAVCKE 228
           C+   G+G+T  +Y   +G+  +A+C E
Sbjct: 39  CIWGQGDGSTIPVYDTPIGKLGAAICWE 66


>At3g44310.1 68416.m04758 nitrilase 1 (NIT1) identical to SP|P32961
           Nitrilase 1 (EC 3.5.5.1) {Arabidopsis thaliana}
          Length = 346

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +1

Query: 145 CVTLLGEGATCKIYSKELGETPSAVCKE 228
           C+   G+G+T  +Y   +G+  +A+C E
Sbjct: 161 CIWGQGDGSTIPVYDTPIGKLGAAICWE 188


>At3g44300.1 68416.m04757 nitrilase 2 (NIT2) identical to SP|P32962
           Nitrilase 2 (EC 3.5.5.1) {Arabidopsis thaliana}
          Length = 339

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +1

Query: 145 CVTLLGEGATCKIYSKELGETPSAVCKE 228
           C+   G+G+T  +Y   +G+  +A+C E
Sbjct: 154 CIWGQGDGSTIPVYDTPIGKLGAAICWE 181


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,321,553
Number of Sequences: 28952
Number of extensions: 157907
Number of successful extensions: 360
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 354
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 360
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 557595584
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)