Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1096
         (399 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz...    26   2.5  
SPAC14C4.10c |||Nudix family hydrolase|Schizosaccharomyces pombe...    24   7.6  
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa...    24   7.6  
SPAC3A12.04c |||RNase P and RNase MRP subunit p30 |Schizosacchar...    24   10.0 

>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 25.8 bits (54), Expect = 2.5
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +1

Query: 220 VTLAAEXVIASTKLVLSVCSPYFQEMFKMNPTQHPIVFLKDVSHS 354
           V  A +  +AS K V  +          ++ TQH +  LKDV HS
Sbjct: 126 VANARKETVASEKRVNQLKKQLVDAETLLSSTQHQLTELKDVMHS 170


>SPAC14C4.10c |||Nudix family hydrolase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 329

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 298 FKMNPTQHPIVFLKDVSHSALRDLLQFMYP 387
           + + P Q P  FL+ ++HS   DL  F+ P
Sbjct: 219 YSLPPYQRP--FLRGITHSIFVDLFIFLSP 246


>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 639

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 12/51 (23%), Positives = 22/51 (43%)
 Frame = -2

Query: 278 EHTDRTNLVLAITXSAANVTSTRSPRDSRP*KPADIFAWKLFQHSENCSSD 126
           ++ D TN +  +          R P D +  KP +IF     Q+  + S++
Sbjct: 98  QNNDFTNSLQGLDFGTFGSRIQREPIDRKSNKPGEIFVGATLQNESSTSTE 148


>SPAC3A12.04c |||RNase P and RNase MRP subunit p30
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 235

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 25/69 (36%), Positives = 31/69 (44%), Gaps = 9/69 (13%)
 Frame = -2

Query: 272 TDRTNLVLAITXSAANVTS-TRSPRDSRP*KPADIFA--WKLFQHS------ENCSSDAM 120
           T+ T+LV A       VTS TR+P + R        A  W L Q        E+C S  +
Sbjct: 159 TNATSLVRATRGRGIIVTSETRTPLECRAGFDVINLATFWDLKQDQARKSVGESCRSVLL 218

Query: 119 IATTRRGTY 93
            A TRR TY
Sbjct: 219 HAETRRDTY 227


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,672,868
Number of Sequences: 5004
Number of extensions: 31211
Number of successful extensions: 73
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)