Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS1096
(399 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0604 - 16132173-16132391,16132488-16132556,16132824-161328... 35 0.027
06_01_1008 - 7853089-7854147 33 0.11
07_01_1036 + 9021395-9021658,9024214-9024690 31 0.44
08_01_0797 + 7711772-7712869 28 2.4
06_01_0471 - 3341839-3341881,3341987-3342080,3344724-3344914,334... 27 4.1
04_04_0804 + 28171110-28171176,28171829-28172317,28172384-28173072 27 4.1
11_06_0458 + 23808402-23808469,23808800-23809684,23810011-238119... 27 7.2
08_02_1310 - 26037025-26038074 27 7.2
04_04_0489 + 25600543-25601368,25601441-25602282 27 7.2
01_05_0604 - 23583244-23584989 27 7.2
08_02_1304 - 26008105-26009070 26 9.5
>05_03_0604 -
16132173-16132391,16132488-16132556,16132824-16132898,
16132981-16133113,16133188-16133297,16133360-16133407,
16133657-16133983,16135006-16135233,16135360-16135689,
16135780-16136586
Length = 781
Score = 34.7 bits (76), Expect = 0.027
Identities = 21/49 (42%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Frame = +1
Query: 256 KLVLSVCSPYFQEMFK--MNPTQHPIVFLKDVSHSALRDLLQFMYPGEV 396
KL+LS+ S F +MF M + VF +DV A L+QFMY GE+
Sbjct: 367 KLILSLWSMTFDKMFTNGMKESSASNVFFEDVPVEAFFLLIQFMYSGEL 415
>06_01_1008 - 7853089-7854147
Length = 352
Score = 32.7 bits (71), Expect = 0.11
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Frame = +1
Query: 193 LLSRGDLVDVTLAAEXVIASTKLVLSVCSPYFQEMF--KMNPTQHPIVFLKDVSHSALRD 366
L +G V +A E +A K++L+ SP F F M + V +KD+ S +
Sbjct: 172 LSEKGADVTFVVAGESFLAH-KIILAARSPVFMAEFFGPMKESSSQCVEIKDIEASVFKA 230
Query: 367 LLQFMYPG 390
+L F+Y G
Sbjct: 231 MLHFIYTG 238
>07_01_1036 + 9021395-9021658,9024214-9024690
Length = 246
Score = 30.7 bits (66), Expect = 0.44
Identities = 15/52 (28%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Frame = +1
Query: 244 IASTKLVLSVCSPYFQEMFK--MNPTQHPIVFLKDVSHSALRDLLQFMYPGE 393
+ + +++L+ SP F+ M + M ++ I+ + DVS+ LR + +MY E
Sbjct: 81 VPAHRVILASRSPVFRAMLENEMEESRSGIIKIYDVSYDVLRAFVHYMYTAE 132
>08_01_0797 + 7711772-7712869
Length = 365
Score = 28.3 bits (60), Expect = 2.4
Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Frame = +1
Query: 166 ANMSAGFHGLLSRGDLV--DVTLAAEXV-IASTKLVLSVCSPYFQEMFKMNPTQHPI--V 330
+ +S F LL + V DV + E A+ KLVL+ SP F+ F + +
Sbjct: 174 SELSEHFGKLLEEEEDVGRDVVFSVEGESFAAHKLVLAARSPVFKAEFYGEMIERGTFSI 233
Query: 331 FLKDVSHSALRDLLQFMY 384
+KD+ S R LL F+Y
Sbjct: 234 DIKDMQPSVFRALLHFIY 251
>06_01_0471 -
3341839-3341881,3341987-3342080,3344724-3344914,
3345025-3345248
Length = 183
Score = 27.5 bits (58), Expect = 4.1
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +3
Query: 183 LSWPAVAWRSRRRNVGCRXGYCK 251
+ WP V RRR+ GC GY K
Sbjct: 80 VGWPPVKCLHRRRDGGCGGGYVK 102
>04_04_0804 + 28171110-28171176,28171829-28172317,28172384-28173072
Length = 414
Score = 27.5 bits (58), Expect = 4.1
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +1
Query: 274 CSPYFQEMFKMNPTQHPIVFLKDVSHSALRDLLQFMYPGEVN 399
C P + F T++P+VFL+ + + DLLQ + V+
Sbjct: 253 CEPRKEIFFTERNTENPLVFLRFLVSTPWGDLLQIKFSRRVH 294
>11_06_0458 +
23808402-23808469,23808800-23809684,23810011-23811961,
23812210-23812285,23813064-23813072,23813243-23813335,
23813578-23813581,23813780-23814703,23814926-23815909,
23816073-23816118,23816376-23816951,23817253-23817798,
23817820-23818416
Length = 2252
Score = 26.6 bits (56), Expect = 7.2
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = -2
Query: 167 AWKLFQHS--ENCSSDAMIATTRRGTYPKLCT 78
AWK ++S EN ++ TTR GT K C+
Sbjct: 331 AWKTIRYSLLENNCGSRILVTTRIGTVAKSCS 362
>08_02_1310 - 26037025-26038074
Length = 349
Score = 26.6 bits (56), Expect = 7.2
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Frame = +1
Query: 208 DLVDVTLAAEX-VIASTKLVLSVCSPYFQEMF--KMNPTQHPIVFLKDVSHSALRDLLQF 378
D DV L + + VL+ SP F+ M P V L+D+ +A R +L F
Sbjct: 177 DTADVALVVGGETFRAHRAVLAARSPVFKAALFGSMAEATAPSVALRDMDPAAFRAVLHF 236
Query: 379 MY 384
+Y
Sbjct: 237 IY 238
>04_04_0489 + 25600543-25601368,25601441-25602282
Length = 555
Score = 26.6 bits (56), Expect = 7.2
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = +2
Query: 47 FFKCFSYRNYKYKA*DRFHVESSLSW 124
FFK + Y NY+Y +R ++ +++W
Sbjct: 487 FFKKWMYANYRYLMGERPRLDEAMAW 512
>01_05_0604 - 23583244-23584989
Length = 581
Score = 26.6 bits (56), Expect = 7.2
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = +2
Query: 47 FFKCFSYRNYKYKA*DRFHVESSLSW 124
FFK + Y NY+Y +R ++ +++W
Sbjct: 513 FFKKWMYANYRYLMGERPRLDEAMAW 538
>08_02_1304 - 26008105-26009070
Length = 321
Score = 26.2 bits (55), Expect = 9.5
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = +1
Query: 256 KLVLSVCSPYFQE--MFKMNPTQHPIVFLKDVSHSALRDLLQFMY 384
+ VL+ SP F+ + M P V L+D+ + R LL F+Y
Sbjct: 169 RAVLAARSPVFRAELLGSMAEATMPCVTLRDIEPATFRALLHFVY 213
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,268,325
Number of Sequences: 37544
Number of extensions: 187422
Number of successful extensions: 396
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 392
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 396
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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