Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1096
         (399 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g30600.2 68415.m03729 BTB/POZ domain-containing protein conta...    40   6e-04
At2g30600.1 68415.m03728 BTB/POZ domain-containing protein conta...    40   6e-04
At5g21010.1 68418.m02497 speckle-type POZ protein-related contai...    32   0.12 
At1g01640.2 68414.m00082 speckle-type POZ protein-related contai...    31   0.37 
At1g01640.1 68414.m00081 speckle-type POZ protein-related contai...    31   0.37 
At4g08455.1 68417.m01394 BTB/POZ domain-containing protein Inter...    29   1.5  

>At2g30600.2 68415.m03729 BTB/POZ domain-containing protein contains
           Pfam PF00651: BTB/POZ domain; contains Interpro
           IPR000210/ PS50097: BTBB/POZ domain; similar to MigA
           (GI:1841872) [Dictyostelium discoideum]
          Length = 809

 Score = 39.9 bits (89), Expect = 6e-04
 Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
 Frame = +1

Query: 193 LLSRGDLVDVTLAAEX---VIASTKLVLSVCSPYFQEMFK--MNPTQHPIVFLKDVSHSA 357
           L S G+  D+ +          S K++LS+ S  F +MF   M+ +    ++L DVS  A
Sbjct: 344 LYSTGEYSDIKIYLSDHSLTFQSHKVILSLWSVAFAKMFTNGMSESHSSTIYLTDVSPEA 403

Query: 358 LRDLLQFMYPGEVN 399
            + ++ FMY GE+N
Sbjct: 404 FKAMMNFMYSGELN 417


>At2g30600.1 68415.m03728 BTB/POZ domain-containing protein contains
           Pfam PF00651: BTB/POZ domain; contains Interpro
           IPR000210/ PS50097: BTBB/POZ domain; similar to MigA
           (GI:1841872) [Dictyostelium discoideum]
          Length = 809

 Score = 39.9 bits (89), Expect = 6e-04
 Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
 Frame = +1

Query: 193 LLSRGDLVDVTLAAEX---VIASTKLVLSVCSPYFQEMFK--MNPTQHPIVFLKDVSHSA 357
           L S G+  D+ +          S K++LS+ S  F +MF   M+ +    ++L DVS  A
Sbjct: 344 LYSTGEYSDIKIYLSDHSLTFQSHKVILSLWSVAFAKMFTNGMSESHSSTIYLTDVSPEA 403

Query: 358 LRDLLQFMYPGEVN 399
            + ++ FMY GE+N
Sbjct: 404 FKAMMNFMYSGELN 417


>At5g21010.1 68418.m02497 speckle-type POZ protein-related contains
           Pfam PF00651 : BTB/POZ domain; contains Pfam PF00917:
           MATH domain; similar to Speckle-type POZ protein
           (SP:O43791) [Homo sapiens]
          Length = 410

 Score = 32.3 bits (70), Expect = 0.12
 Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
 Frame = +1

Query: 166 ANMSAGFHGLLSRGDLVDVT--LAAEXVIASTKLVLSVCSPYFQ-EMFKMNPTQHPIVFL 336
           + + + F  LL   +  D+T  +A E  +A  KLVL+  SP+F+ + F      +  V +
Sbjct: 182 SELGSHFGVLLDSMEGSDITFNIAGEKFLAH-KLVLAARSPFFKSKFFSEFEANNTEVTI 240

Query: 337 KDVSHSALRDLLQFMY 384
            D+     + LLQFMY
Sbjct: 241 NDLEPKVFKALLQFMY 256


>At1g01640.2 68414.m00082 speckle-type POZ protein-related contains
           Pfam profile:PF00651 BTB/POZ domain; similar to
           Speckle-type POZ protein (SP:O43791) [Homo sapiens]
          Length = 207

 Score = 30.7 bits (66), Expect = 0.37
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
 Frame = +1

Query: 244 IASTKLVLSVCSPYFQEMF---KMNPTQHPIVFLKDVSHSALRDLLQFMYPGEV 396
           I + K VL+  S  F+ M    +   +    + L D+SH  L+ LL+F+Y G +
Sbjct: 37  IPTHKAVLAARSKVFRNMLDSDECKTSPEESITLPDLSHDELKSLLEFLYSGNL 90


>At1g01640.1 68414.m00081 speckle-type POZ protein-related contains
           Pfam profile:PF00651 BTB/POZ domain; similar to
           Speckle-type POZ protein (SP:O43791) [Homo sapiens]
          Length = 207

 Score = 30.7 bits (66), Expect = 0.37
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
 Frame = +1

Query: 244 IASTKLVLSVCSPYFQEMF---KMNPTQHPIVFLKDVSHSALRDLLQFMYPGEV 396
           I + K VL+  S  F+ M    +   +    + L D+SH  L+ LL+F+Y G +
Sbjct: 37  IPTHKAVLAARSKVFRNMLDSDECKTSPEESITLPDLSHDELKSLLEFLYSGNL 90


>At4g08455.1 68417.m01394 BTB/POZ domain-containing protein Interpro
           IPR000210/ PS50097: BTBB/POZ domain; similar to POZ 56
           protein (GI:17483747) [Mus musculus]
          Length = 243

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
 Frame = +1

Query: 229 AAEXVIASTKLVLSVCSPYFQEMFK--MNPTQHPIVFLKDVSHSALRDLLQFMYPGE 393
           A    I + K VL   SP F+ M +  M  +    + + DVS+ ALR  + ++Y  E
Sbjct: 75  AGSPPIPAHKSVLVSRSPVFKAMLENEMEESLSGTIKISDVSYDALRTFVYYLYTAE 131


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,526,285
Number of Sequences: 28952
Number of extensions: 156374
Number of successful extensions: 316
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 310
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 315
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 575830496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)