Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1095
         (528 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ...    26   3.0  
SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces pom...    26   4.0  
SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces pom...    26   4.0  
SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1 |Schizosa...    25   5.3  
SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyc...    25   7.0  
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces...    25   9.2  

>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 827

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +1

Query: 244 EYFHTLQSGFSIEGSYTISAPSI 312
           EY++ ++S FS E SYTI    I
Sbjct: 276 EYYYYIRSSFSWEDSYTIEVVQI 298


>SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 601

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 174 NFQRLTHFL*YWRYKCSRH 230
           N  R+ H + +W YK SRH
Sbjct: 521 NRARIAHSIYHWEYKVSRH 539


>SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 564

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +2

Query: 17  VFFFFFLSQNPFYFLMIFSKH 79
           V +FF L  NPF  LM+FS H
Sbjct: 124 VSYFFSLKNNPF-CLMLFSSH 143


>SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 652

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
 Frame = +1

Query: 196 SYNTGDINVHVIFSVTEYFHTL-QSGFSIEGSYTISAPSITSGLLFGRSVISFQSNILTS 372
           SYNTGD    V  S+  +F T  ++    +   +  +P+       G  V++F++    +
Sbjct: 554 SYNTGDSIPQVSKSINGHFETYSRTSMDTDDVASFESPN-AKHEESGMPVVTFRN--YEN 610

Query: 373 VSESPVKIGPAVPEISNSTNI 435
              +P    P VP   +S N+
Sbjct: 611 YDANPSNFHPVVPGFVSSPNL 631


>SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 835

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = -1

Query: 252 KIFCDRKNDVNIYIASIIRNELTFESFLQVLETY 151
           K+     N++ IY+   I+ ++   SF Q+L  Y
Sbjct: 560 KVIETMDNNLIIYVVLQIKQQMAIASFFQILNEY 593


>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1441

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +1

Query: 226  VIFSVTEYFHTLQSGFSIEGSYTISAPSITSGLLFG 333
            ++ ++ +  H +   F   GSYT+SA  + + LLFG
Sbjct: 1190 IVRALEDEDHLVGVSFIDLGSYTLSAKCLRNLLLFG 1225


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,975,431
Number of Sequences: 5004
Number of extensions: 39973
Number of successful extensions: 116
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)