Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1095
         (528 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z12017-8|CAA78050.3|  371|Caenorhabditis elegans Hypothetical pr...    36   0.014
AF067214-10|AAC17009.1|  206|Caenorhabditis elegans Hypothetical...    28   4.8  
U53139-11|AAK18936.2|  353|Caenorhabditis elegans Serpentine rec...    27   8.3  
AF003134-5|AAB54139.1|  357|Caenorhabditis elegans Nek (never in...    27   8.3  

>Z12017-8|CAA78050.3|  371|Caenorhabditis elegans Hypothetical
           protein R08D7.4 protein.
          Length = 371

 Score = 36.3 bits (80), Expect = 0.014
 Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
 Frame = -2

Query: 368 VKMLDWNEITDLPNKRP-DVILGADIVYDPSILKPLCNV 255
           V+ L+W +      K P D+I+ AD+VYD ++L  LCNV
Sbjct: 249 VRSLNWCDFDFSEWKEPTDLIIAADVVYDTALLASLCNV 287


>AF067214-10|AAC17009.1|  206|Caenorhabditis elegans Hypothetical
           protein F56C3.9 protein.
          Length = 206

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 13/50 (26%), Positives = 28/50 (56%)
 Frame = +1

Query: 214 INVHVIFSVTEYFHTLQSGFSIEGSYTISAPSITSGLLFGRSVISFQSNI 363
           +N++ +  ++EYFH L++GF  E    ++A  +    +F   ++ F S +
Sbjct: 29  VNLNYLAELSEYFHILRTGFYSE----MTAEKVNLNDVFAEDLVVFLSYV 74


>U53139-11|AAK18936.2|  353|Caenorhabditis elegans Serpentine
           receptor, class w protein71 protein.
          Length = 353

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 13/50 (26%), Positives = 28/50 (56%)
 Frame = -2

Query: 476 HELNDFDGTTYELAMLVELLISGTAGPILTGLSLTDVKMLDWNEITDLPN 327
           +++ND+    ++ A  V + ISGT+  IL  ++   + +L ++E+    N
Sbjct: 193 YDINDYQAVVFQKARKVHMFISGTS-DILVAITYPILTILLFHELVKSSN 241


>AF003134-5|AAB54139.1|  357|Caenorhabditis elegans Nek (never in
           mitosis kinase) likeprotein 2 protein.
          Length = 357

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 24/80 (30%), Positives = 38/80 (47%)
 Frame = -2

Query: 494 VLIDIYHELNDFDGTTYELAMLVELLISGTAGPILTGLSLTDVKMLDWNEITDLPNKRPD 315
           VL ++      FDG    L  +V  +      P+   +S  DVKML  N +    +KRPD
Sbjct: 201 VLYELLQLERAFDGEN--LPAIVMKITRSKQNPLGDHVS-NDVKMLVENLLKTHTDKRPD 257

Query: 314 VILGADIVYDPSILKPLCNV 255
           V   + ++ DP +L  L ++
Sbjct: 258 V---SQLLSDPLVLPYLISI 274


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,681,981
Number of Sequences: 27780
Number of extensions: 215985
Number of successful extensions: 526
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 526
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1038911524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)