Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1091
         (449 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0409 - 3084821-3084988,3085069-3085155,3085270-3085476,308...    28   4.0  
11_01_0370 + 2814888-2814979,2815450-2815620,2815753-2815834,281...    27   9.2  
03_05_0172 - 21488504-21488752,21488862-21489611,21489691-214897...    27   9.2  

>01_01_0409 -
           3084821-3084988,3085069-3085155,3085270-3085476,
           3085904-3085985,3086085-3086275,3086410-3086616,
           3086709-3086871,3087905-3087960,3088035-3088148,
           3088599-3089807
          Length = 827

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +1

Query: 79  LVCPKNTEHRARHAGKCACCP 141
           L C K++  R  HAGKC  CP
Sbjct: 313 LQCGKHSCERGCHAGKCGGCP 333


>11_01_0370 +
           2814888-2814979,2815450-2815620,2815753-2815834,
           2816275-2816316,2816397-2816456,2816817-2816913,
           2817382-2819024,2819155-2819256,2819369-2819509,
           2819625-2819750,2819935-2820096
          Length = 905

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = -2

Query: 151 LHKRDNKHTFQRVWRDAQCS*GKQVVAVCMDFFHSSLYHIPKHRTL*RN 5
           ++ + +    Q+V+RD Q     Q +A+  D   SSL  + K   L  N
Sbjct: 259 VYSKPDVRFIQQVYRDGQLGSNAQSIAMSSDLISSSLRSVQKQPLLMNN 307


>03_05_0172 -
           21488504-21488752,21488862-21489611,21489691-21489789,
           21489862-21490776,21490847-21490976,21491438-21491583,
           21491801-21491896,21492521-21492613,21492702-21492755,
           21492897-21492956,21493046-21493171,21493283-21493366,
           21493444-21493587,21493667-21493963
          Length = 1080

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -1

Query: 215 AEGVSPSSFE*ILQVAPSPSKVTQAGQQAHFPA 117
           A G SP S + +   A  PSK    G+QA  PA
Sbjct: 60  APGASPRSSKPVPTSAAPPSKAAAEGEQASAPA 92


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,403,360
Number of Sequences: 37544
Number of extensions: 215879
Number of successful extensions: 504
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 504
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)