Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1089
         (409 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    29   0.28 
SPAC637.07 |moe1||translation initiation factor eIF3d Moe1|Schiz...    29   0.28 
SPCC2H8.05c ||SPCC63.01c|sequence orphan|Schizosaccharomyces pom...    27   1.5  
SPAC26A3.01 |sxa1|SPAC2E1P5.06|aspartic protease Sxa1 |Schizosac...    26   2.0  
SPAC3A12.13c |||translation initiation factor eIF3 complex subun...    26   2.0  
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    26   2.0  
SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyce...    25   3.4  
SPAC16A10.07c |taz1|myb1, myb|human TRF ortholog Taz1|Schizosacc...    25   4.5  
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb...    25   6.0  
SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr...    24   7.9  
SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase Clp1/F...    24   7.9  

>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 29.1 bits (62), Expect = 0.28
 Identities = 25/84 (29%), Positives = 41/84 (48%)
 Frame = +2

Query: 86  SASSLMLTAYVVASTAFAISLVFWAVSKPTSTSRTLLSVVNSISSRLTFVEVVSVGLQLA 265
           S+SS   TA   +S++  IS    + S PTSTS T+ S  +S SS  +    +S     +
Sbjct: 255 SSSSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTISSSSSSSSSPTSTSSTISSSSSSS 314

Query: 266 SCYPLAAFASAGR*FSTRLSRKPS 337
           S +  +  +S+    S+  S  P+
Sbjct: 315 SSFS-STLSSSSMSSSSSFSSSPT 337


>SPAC637.07 |moe1||translation initiation factor eIF3d
           Moe1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 567

 Score = 29.1 bits (62), Expect = 0.28
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -2

Query: 186 RDVDVGLETAQKTNEIAKAVEATTYAVNIRDDAEFLPI 73
           RDVD+ LET +K  ++    E   Y  N  +D +++ I
Sbjct: 379 RDVDLSLETDEKPVKLMVRTEVDGYVKNPANDVQYISI 416


>SPCC2H8.05c ||SPCC63.01c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 217

 Score = 26.6 bits (56), Expect = 1.5
 Identities = 12/48 (25%), Positives = 24/48 (50%)
 Frame = -2

Query: 228 VSREEMEFTTESNVRDVDVGLETAQKTNEIAKAVEATTYAVNIRDDAE 85
           V  E+ E T   +  DV++  + + + N +A+  + T+    + DD E
Sbjct: 131 VREEQEEKTDNEDDNDVEISTQESLENNGLAEKKDDTSSLATLEDDIE 178


>SPAC26A3.01 |sxa1|SPAC2E1P5.06|aspartic protease Sxa1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +2

Query: 86  SASSLMLTAYVVASTAFAISLVFWAVSKPTSTS 184
           S S+    +  +A+T+F  SLV  A + P+STS
Sbjct: 463 SVSATPTVSMSIAATSFGSSLVLTASASPSSTS 495


>SPAC3A12.13c |||translation initiation factor eIF3 complex
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 274

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
 Frame = -3

Query: 407 QANSAFNHYLK--IQNLPWDVNSEGSWVYEKDVLKITFPLKQKQPEDSKRPVASPLRRPL 234
           Q  + +N++++  I  L   +N+      +K V K+    +Q++   SKR  A+P  +P+
Sbjct: 168 QTTAEYNNFVQDLIPLLLTGLNATNLKAVQKSVNKLVVNKEQQEKTQSKRGAAAPAAKPV 227


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 14/50 (28%), Positives = 28/50 (56%)
 Frame = +2

Query: 68  YGIGKNSASSLMLTAYVVASTAFAISLVFWAVSKPTSTSRTLLSVVNSIS 217
           Y + ++S +S++  AY+  S +   S V   ++ PTS+S  + S++   S
Sbjct: 387 YSVVQSSLASIISNAYIATSKSGLNSGVSTLLASPTSSSTFVTSLLRRSS 436


>SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 415

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -3

Query: 314 LKITFPLKQKQPEDSKRPVASPLRRP 237
           L +T P  +  P+   +P +SP+RRP
Sbjct: 347 LPLTHPNSEPNPKLDSQPNSSPVRRP 372


>SPAC16A10.07c |taz1|myb1, myb|human TRF ortholog
           Taz1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 663

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = -2

Query: 261 SCKPTETTSTNVSREEMEFTTESNVRDVDVGLETAQKTNEIAKAVE 124
           S + TET    +  E  +   +  V++ D  +ET Q ++ + KAVE
Sbjct: 3   SVQSTETIQKVLENEGDQQFDKEVVQNSDSNIETGQISDSLTKAVE 48


>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 952

 Score = 24.6 bits (51), Expect = 6.0
 Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 1/84 (1%)
 Frame = -2

Query: 381 LENTEPSLGCEFRRQLGLRERRVENHLPAEAKAARG*QEASCKPTETTSTNVSREEMEFT 202
           L+NT+ +L  E  R   L+ +  +  L  E        E   +   +    +S +  E  
Sbjct: 503 LKNTKGNLDDEIGRSAFLKSQIRDQELTIEK--LHDSLETLSQTNNSLQCEISEKNAELN 560

Query: 201 T-ESNVRDVDVGLETAQKTNEIAK 133
           +  S + +    LETA K NEI K
Sbjct: 561 SVNSKLSEGRAHLETANKENEILK 584


>SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 877

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 215 RWSSPPRATCGTLTSAWRQPRRPMRSRKL 129
           R  +PP +  GT+ S +R    P+ SRKL
Sbjct: 356 RRENPPISILGTVPSGFRDMGVPVISRKL 384


>SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase
           Clp1/Flp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -3

Query: 284 QPEDSKRPVASPLRRPLRM*VVKRWSS 204
           +P   + P +SP   P+R     RWSS
Sbjct: 473 EPNGVRSPTSSPTGSPIRRTSGNRWSS 499


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,545,775
Number of Sequences: 5004
Number of extensions: 27895
Number of successful extensions: 99
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 140222766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)