Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS1089
(409 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1052 - 25698263-25698394,25698587-25698679,25698945-256989... 31 0.27
01_07_0248 + 42261373-42261609,42261733-42261905,42261986-422620... 31 0.27
06_02_0032 + 10775031-10775520,10775661-10776246,10776333-107769... 31 0.47
09_04_0579 + 18676165-18676524,18676846-18677058,18677136-186772... 29 1.4
08_02_1129 - 24513568-24514296,24515380-24515817 29 1.9
05_03_0626 - 16335816-16335917,16336331-16336558,16336694-163369... 28 2.5
03_06_0026 - 31118997-31119113,31119700-31119900,31120032-311202... 28 2.5
08_01_0014 + 102100-102455,102543-102900 27 7.6
>12_02_1052 -
25698263-25698394,25698587-25698679,25698945-25698995,
25699074-25699258,25699361-25699407,25699704-25699918
Length = 240
Score = 31.5 bits (68), Expect = 0.27
Identities = 17/38 (44%), Positives = 23/38 (60%)
Frame = -3
Query: 194 ATCGTLTSAWRQPRRPMRSRKL*KRPRTLSTSETMRSS 81
A C TS+ R+ RRPMR+ +R RT S++ T R S
Sbjct: 40 ACCTAATSSTRRSRRPMRASASSRRRRTPSSTWTPRPS 77
>01_07_0248 + 42261373-42261609,42261733-42261905,42261986-42262058,
42262148-42262282,42262352-42262562,42262886-42263034,
42263169-42263267,42263821-42263989,42264176-42264308,
42264600-42264694,42264774-42264882,42265136-42265295,
42265433-42265594,42265814-42265985,42266254-42266402,
42266914-42266951,42267779-42267839,42267913-42268155,
42268233-42268315,42269521-42269609,42270449-42270495,
42270576-42270656,42270737-42270899,42271077-42271267,
42271691-42271762
Length = 1097
Score = 31.5 bits (68), Expect = 0.27
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = -3
Query: 311 KITFPLKQKQPEDSKRPVASPLRRPLRM*VVKRWSSPPRATCGT 180
+I P +Q P +RP + P+RR V+R +PPR G+
Sbjct: 1030 RIESPRRQPDPSPRRRPDSPPIRRRADASPVRRGDTPPRRRPGS 1073
>06_02_0032 +
10775031-10775520,10775661-10776246,10776333-10776973,
10777270-10777973
Length = 806
Score = 30.7 bits (66), Expect = 0.47
Identities = 20/81 (24%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Frame = -2
Query: 324 ERRVENHLPAEAKAARG*QEASCKPTETTSTNVSREEMEFTTESNVRDV-DVGLETAQKT 148
ER V+ PA+ + + + KP+ET S + +E+ T +++ + + T+ +T
Sbjct: 584 ERVVQKSPPAQDEDVIEQETQTLKPSETMSADEIKEDDRTTKSADIENAGEAKNNTSNET 643
Query: 147 NEIAKAVEATTYAVNIRDDAE 85
NE K A T + D+++
Sbjct: 644 NEKEKQERAATESNEKEDESK 664
>09_04_0579 +
18676165-18676524,18676846-18677058,18677136-18677288,
18677503-18677622,18677696-18677782,18677876-18678313
Length = 456
Score = 29.1 bits (62), Expect = 1.4
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -3
Query: 209 SSPPRATCGTLTSAWRQPRRPMR 141
SS PR C LTS +R+P P R
Sbjct: 26 SSTPRRRCAALTSRFREPASPRR 48
>08_02_1129 - 24513568-24514296,24515380-24515817
Length = 388
Score = 28.7 bits (61), Expect = 1.9
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +3
Query: 150 SSGLSPSRRQRPARCSRW*TPS 215
+S +SP QR A CSRW PS
Sbjct: 259 ASAVSPPAEQRAACCSRWWVPS 280
>05_03_0626 -
16335816-16335917,16336331-16336558,16336694-16336973,
16337596-16338560
Length = 524
Score = 28.3 bits (60), Expect = 2.5
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = -3
Query: 215 RWSSPPRATCGTLTSAWRQPRRPMR 141
RW+ PP C T S + P RP R
Sbjct: 120 RWAPPPAPRCSTPLSPYSPPFRPAR 144
>03_06_0026 -
31118997-31119113,31119700-31119900,31120032-31120218,
31120339-31120415,31120738-31120815,31120858-31120974,
31121047-31121175,31121327-31121479,31121589-31122044,
31122122-31122239,31122385-31122575,31123140-31123415,
31123524-31123700,31124040-31124141,31124227-31124459,
31125563-31125764
Length = 937
Score = 28.3 bits (60), Expect = 2.5
Identities = 11/51 (21%), Positives = 28/51 (54%)
Frame = -2
Query: 225 SREEMEFTTESNVRDVDVGLETAQKTNEIAKAVEATTYAVNIRDDAEFLPI 73
+R + + ++ R V + ++ + + +++++T A NI+ AEF P+
Sbjct: 44 ARRRLAVRSVASDRGVQGSVSPEEEISSVLNSIDSSTIASNIKHHAEFTPV 94
>08_01_0014 + 102100-102455,102543-102900
Length = 237
Score = 26.6 bits (56), Expect = 7.6
Identities = 18/72 (25%), Positives = 30/72 (41%)
Frame = +2
Query: 131 AFAISLVFWAVSKPTSTSRTLLSVVNSISSRLTFVEVVSVGLQLASCYPLAAFASAGR*F 310
A AI+ + +S P S + + S + L + + VGL A+ AA
Sbjct: 124 ANAIAAGYMVLSLPFSAATIMSSKATGVKLLLLICDTIMVGLLTAAASAAAAMVYVAHEG 183
Query: 311 STRLSRKPSCLR 346
+ R + P CL+
Sbjct: 184 NLRANWVPICLQ 195
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,099,694
Number of Sequences: 37544
Number of extensions: 190150
Number of successful extensions: 609
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 609
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 718652880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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