Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1089
         (409 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6619| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   3.4  
SB_43390| Best HMM Match : fn3 (HMM E-Value=9.3e-30)                   27   4.5  
SB_21071| Best HMM Match : efhand (HMM E-Value=0.48)                   27   5.9  
SB_50907| Best HMM Match : ETC_C1_NDUFA4 (HMM E-Value=7.6)             27   5.9  
SB_55491| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.8  
SB_9272| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.8  
SB_4237| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.8  
SB_54268| Best HMM Match : Vicilin_N (HMM E-Value=0.077)               27   7.8  
SB_53017| Best HMM Match : Kazal_1 (HMM E-Value=0)                     27   7.8  
SB_48253| Best HMM Match : zf-C3HC4 (HMM E-Value=0.12)                 27   7.8  
SB_44503| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.8  
SB_22856| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.8  
SB_11546| Best HMM Match : DUF1407 (HMM E-Value=1.2)                   27   7.8  

>SB_6619| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 942

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 24/71 (33%), Positives = 32/71 (45%)
 Frame = -3

Query: 293 KQKQPEDSKRPVASPLRRPLRM*VVKRWSSPPRATCGTLTSAWRQPRRPMRSRKL*KRPR 114
           K K+ +  K P+ SP  +  R    KR S  P        S  R+  R  RSR + +R R
Sbjct: 292 KSKERKTLKSPIRSPRGQSSRERNTKRKSKSP--------SLERRRSRARRSRSIERRDR 343

Query: 113 TLSTSETMRSS 81
             S S + RSS
Sbjct: 344 RRSRSRSPRSS 354


>SB_43390| Best HMM Match : fn3 (HMM E-Value=9.3e-30)
          Length = 1043

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -3

Query: 386 HYLKIQNLPWDVNSEGSWVYEKDVLKITFPLKQKQP 279
           H+L+I  LP +VNS+    ++ D +  + P+    P
Sbjct: 839 HHLRISPLPINVNSQSGSTFQADCIIYSEPVDDSAP 874


>SB_21071| Best HMM Match : efhand (HMM E-Value=0.48)
          Length = 151

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = -3

Query: 356 DVNSEGSWVYEKDVLKITFPLKQKQPEDSK--RPVASPLRRP 237
           DVN +G  VY KD L+  F L  K  +DSK  RP   P + P
Sbjct: 112 DVNGKGRIVY-KDFLR-HFVLAMKPQDDSKLIRPKLQPTKVP 151


>SB_50907| Best HMM Match : ETC_C1_NDUFA4 (HMM E-Value=7.6)
          Length = 94

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 15/63 (23%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
 Frame = -2

Query: 333 GLRERRVE---NHLPAEAKAARG*QEASCKPTETTSTNVSREEMEFTTESNVRDVDVGLE 163
           G+RE ++    ++ P  +  + G +    KP +  +T++ +E  +F  + +  DVDV  +
Sbjct: 14  GVREPKLPAKASNPPTTSAESSGKEVDEKKPNQNGTTDMLQENKDFVNQFSALDVDVHKQ 73

Query: 162 TAQ 154
           +A+
Sbjct: 74  SAK 76


>SB_55491| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 197

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = +3

Query: 120 SLLQLSRSHWSSGLSPSRRQRPARCSRW*TPSLHDLHS 233
           SL +LS +    G+ P   + P    +W     HD HS
Sbjct: 3   SLEELSTNFAPPGIGPQATRAPYNSKQWSRTDQHDFHS 40


>SB_9272| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 664

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = -3

Query: 293 KQKQPEDSKRPVASPLRRPLRM*VVKRWSSPPRATCGTLTSAWRQPRRPMRSR 135
           K K   ++  PV +P  RPL +  +K+    PRA+      +  +PR P + R
Sbjct: 14  KLKDLGENVAPV-TPTTRPLLLKKLKKLQQSPRASPKATRKSTPKPRTPSKGR 65


>SB_4237| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1438

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = -2

Query: 267 EASCKPTETTSTNVSREEMEFTTESNVRDVDVGLETAQ 154
           EA  + T+T S     EE E T E  + D D   E A+
Sbjct: 566 EAEEEETQTESPTEKVEEAEATAEVPIEDADTSTEEAE 603


>SB_54268| Best HMM Match : Vicilin_N (HMM E-Value=0.077)
          Length = 371

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -2

Query: 393 F*SLLENTEPSLGCEFRRQLGLRERRVENHLPAE 292
           F S LE     +  ++R+Q+G  E R+E+H   E
Sbjct: 317 FSSSLERLRVDMDSDYRQQMGQLESRLEDHYSRE 350


>SB_53017| Best HMM Match : Kazal_1 (HMM E-Value=0)
          Length = 1488

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 16/52 (30%), Positives = 22/52 (42%)
 Frame = -3

Query: 209 SSPPRATCGTLTSAWRQPRRPMRSRKL*KRPRTLSTSETMRSSCRFHINLIK 54
           S  P  T   + +   Q R   RSRKL        T   ++ SC+FH   +K
Sbjct: 191 SIAPEKTGDLVVTVRGQERPRKRSRKLLDAIAMALTDPCLKISCKFHSRCVK 242


>SB_48253| Best HMM Match : zf-C3HC4 (HMM E-Value=0.12)
          Length = 156

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = -2

Query: 240 TSTNVSREEMEFTTESNVRDVDVGLETAQKTNEIAKAVEATTYAVNI 100
           T+  + +E   F    +++D++  +E  QKT +I   +E   Y+V I
Sbjct: 110 TADGLIKEGQMFGKRESLKDLESYVEGPQKTFKIKMIIEHIAYSVTI 156


>SB_44503| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1347

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
 Frame = -2

Query: 261 SCKPTETTSTNVSREE---MEFTTESNVRDVDVGLETAQKTNEIAKAVEATTYAVNIRDD 91
           SC+P E T     R+     + +T     D  +G E   K   + K    TTY V++ DD
Sbjct: 138 SCEPCEATIRINLRDTPGTAKRSTSEARGDYILGSELNPKKVTLPKGKNYTTYTVSVSDD 197

Query: 90  A 88
           A
Sbjct: 198 A 198


>SB_22856| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 140

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -3

Query: 299 PLKQKQPEDSKRPVASPLRRPLRM*VVKRWSSP 201
           PL ++  E   RP++ PL RPL   +V+ +S P
Sbjct: 63  PLMRQLSEPLMRPLSGPLIRPLLGPLVRPFSEP 95


>SB_11546| Best HMM Match : DUF1407 (HMM E-Value=1.2)
          Length = 367

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = -2

Query: 240 TSTNVSREEMEFTTESNVRDVDVGLETAQKTNEIAKAVEATTYAVNI 100
           T+  + +E   F    +++D++  +E  QKT +I   +E   Y+V I
Sbjct: 321 TADGLIKEGQMFGKRESLKDLESYVEGPQKTFKIKMIIEHIAYSVTI 367


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,678,255
Number of Sequences: 59808
Number of extensions: 217112
Number of successful extensions: 702
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 700
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 740151420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)