Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1089
         (409 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64847-4|AAB04873.1|  492|Caenorhabditis elegans Cytochrome p450...    32   0.18 
U46674-5|AAA85757.1|  708|Caenorhabditis elegans Hypothetical pr...    30   0.74 
U41510-8|AAK39385.1|  493|Caenorhabditis elegans Hypothetical pr...    28   2.3  
Z75711-5|CAB00036.1|  423|Caenorhabditis elegans Hypothetical pr...    28   3.0  
U46675-7|AAB52641.1| 1274|Caenorhabditis elegans Hypothetical pr...    28   3.0  
U40938-2|AAQ65206.1|  463|Caenorhabditis elegans Hypothetical pr...    28   3.0  
U40938-1|AAA81695.2|  465|Caenorhabditis elegans Hypothetical pr...    28   3.0  
Z82053-2|CAB04835.1|  365|Caenorhabditis elegans Hypothetical pr...    27   3.9  
Z70684-10|CAA94602.2|  684|Caenorhabditis elegans Hypothetical p...    27   3.9  
U42841-4|AAK77640.1|  706|Caenorhabditis elegans Gex interacting...    27   5.2  
U23168-3|AAU87831.1| 4034|Caenorhabditis elegans Temporarily ass...    27   5.2  
U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily ass...    27   5.2  
AL132853-3|CAB60438.1|  859|Caenorhabditis elegans Hypothetical ...    27   6.9  
AC024770-8|AAF59486.1|  740|Caenorhabditis elegans Hypothetical ...    27   6.9  
AF039052-3|AAF98627.1|  391|Caenorhabditis elegans Hypothetical ...    26   9.1  
AF016430-2|AAB65371.1| 1106|Caenorhabditis elegans Gex interacti...    26   9.1  
AC006682-1|AAF39956.3| 1853|Caenorhabditis elegans Hypothetical ...    26   9.1  

>U64847-4|AAB04873.1|  492|Caenorhabditis elegans Cytochrome p450
           family protein 14A5 protein.
          Length = 492

 Score = 31.9 bits (69), Expect = 0.18
 Identities = 16/35 (45%), Positives = 17/35 (48%)
 Frame = +2

Query: 284 AFASAGR*FSTRLSRKPSCLRNSHPREGSVFSSND 388
           AF + G  F  R  R P  L   HP  G VFSS D
Sbjct: 82  AFVTQGDAFVNRAQRLPEILFQPHPNTGVVFSSGD 116


>U46674-5|AAA85757.1|  708|Caenorhabditis elegans Hypothetical
           protein T26A8.1 protein.
          Length = 708

 Score = 29.9 bits (64), Expect = 0.74
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
 Frame = -2

Query: 249 TETTSTNVSREEMEFTTESNVRDVDVGL-ETAQKTNEI---AKAVEATTYAVNIRDDAEF 82
           TET ST V    +  TT      +DV   ++ + TN +   + A+E   Y  N  +D+ F
Sbjct: 352 TETPSTTVITTTIPSTTSEPEATIDVKTRDSKEDTNGVLPTSSAIETPPYPENCPEDSLF 411

Query: 81  LP 76
           LP
Sbjct: 412 LP 413


>U41510-8|AAK39385.1|  493|Caenorhabditis elegans Hypothetical
           protein ZC449.5 protein.
          Length = 493

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
 Frame = -2

Query: 300 PAEAKAARG*QEASCKPTETTSTNVSREEMEFTTESNVR-DVDVGLETAQKTNEIAKAVE 124
           PAE+           K TE  S NVS EE+  T+ + V  + +  +++ + + E  K+ E
Sbjct: 137 PAESAETETPSSEENKTTEEESGNVSAEEVTTTSSTEVSVEEEQTVKSTEASTEEEKSTE 196

Query: 123 ATTYA 109
           A+  A
Sbjct: 197 ASEEA 201


>Z75711-5|CAB00036.1|  423|Caenorhabditis elegans Hypothetical
           protein K02B12.7 protein.
          Length = 423

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = -3

Query: 404 ANSAFNHYLKIQNLPWDVNSEGSWVYEKDVLKITFPLK-QKQPEDSKRPVAS 252
           + + FN +LK  NLP    +EG      + LK T P++ +K+ E S +PV S
Sbjct: 310 SQNEFNDWLKQSNLPRG-TTEGGDHLSNEELKPTEPVETKKKKERSVKPVQS 360


>U46675-7|AAB52641.1| 1274|Caenorhabditis elegans Hypothetical
           protein F35A5.1 protein.
          Length = 1274

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = -3

Query: 296 LKQKQPEDSKRPVASPLRRPLRM*VVKRWSSPPRATCGTLTSAWRQP 156
           LK+K+P  S +PV+ P   P +   VK+    P       T  W+ P
Sbjct: 239 LKKKEPSTSVKPVSDP--SPTKKVPVKKEPEVPPTPIKNPTKKWKPP 283


>U40938-2|AAQ65206.1|  463|Caenorhabditis elegans Hypothetical
           protein D1009.3b protein.
          Length = 463

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 18/45 (40%), Positives = 29/45 (64%)
 Frame = -2

Query: 249 TETTSTNVSREEMEFTTESNVRDVDVGLETAQKTNEIAKAVEATT 115
           T TT+T+ + ++ + TTE  V + +  LE A + +EIA  +EATT
Sbjct: 136 TITTTTSQTPDDYD-TTEPFVEEEEYHLEEATEHHEIA-TIEATT 178


>U40938-1|AAA81695.2|  465|Caenorhabditis elegans Hypothetical
           protein D1009.3a protein.
          Length = 465

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 18/45 (40%), Positives = 29/45 (64%)
 Frame = -2

Query: 249 TETTSTNVSREEMEFTTESNVRDVDVGLETAQKTNEIAKAVEATT 115
           T TT+T+ + ++ + TTE  V + +  LE A + +EIA  +EATT
Sbjct: 138 TITTTTSQTPDDYD-TTEPFVEEEEYHLEEATEHHEIA-TIEATT 180


>Z82053-2|CAB04835.1|  365|Caenorhabditis elegans Hypothetical
           protein T26E3.2 protein.
          Length = 365

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +3

Query: 120 SLLQLSRSHWSSGLSPSRRQRPARCSRW*TPSLHDL 227
           ++++  R HW S  SP  RQR     +   PSLH L
Sbjct: 330 AIIRSPRYHWISVESPETRQRFHMAQKQFRPSLHML 365


>Z70684-10|CAA94602.2|  684|Caenorhabditis elegans Hypothetical
           protein F28D1.9 protein.
          Length = 684

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -3

Query: 197 RATCGTLTSAWRQPRRPMRSRKL*KRPRTL 108
           RA C T TS WR+P +P+ +  L K  R L
Sbjct: 4   RANCSTSTSNWRKP-KPLATDVLEKPARLL 32


>U42841-4|AAK77640.1|  706|Caenorhabditis elegans Gex interacting
           protein protein16, isoform c protein.
          Length = 706

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 21/71 (29%), Positives = 31/71 (43%)
 Frame = -3

Query: 320 DVLKITFPLKQKQPEDSKRPVASPLRRPLRM*VVKRWSSPPRATCGTLTSAWRQPRRPMR 141
           D+LK   PL+ K P     P   P+RR       KR++S P      +     +PR  M+
Sbjct: 320 DILKTVPPLRTKTPP----PPPPPVRRHEIYEQHKRYTSAPNLQSAVIRIQDDKPRSIMK 375

Query: 140 SRKL*KRPRTL 108
              L +R + L
Sbjct: 376 RNDLVRREQML 386


>U23168-3|AAU87831.1| 4034|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 308, isoform b protein.
          Length = 4034

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +2

Query: 80   KNSASSLMLTAYVVASTAFAISLVFWAVSKPTSTSRTLLSVVNSISS 220
            K  +SS+   +  + ++   +   FW  SK  ST RT+L    S+ S
Sbjct: 1484 KRRSSSIDRASLKLRASQEEVCTGFWNTSKGESTRRTILQKTKSVES 1530


>U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 308, isoform c protein.
          Length = 7548

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +2

Query: 80   KNSASSLMLTAYVVASTAFAISLVFWAVSKPTSTSRTLLSVVNSISS 220
            K  +SS+   +  + ++   +   FW  SK  ST RT+L    S+ S
Sbjct: 1484 KRRSSSIDRASLKLRASQEEVCTGFWNTSKGESTRRTILQKTKSVES 1530


>AL132853-3|CAB60438.1|  859|Caenorhabditis elegans Hypothetical
           protein Y80D3A.7 protein.
          Length = 859

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -2

Query: 318 RVENHLPAEAKAARG*QEASCKPTETTSTNV 226
           R + HL    + A   QEA C  T TT TN+
Sbjct: 306 RTDKHLEIPERMALTVQEAGCSMTVTTVTNL 336


>AC024770-8|AAF59486.1|  740|Caenorhabditis elegans Hypothetical
           protein Y39H10A.2 protein.
          Length = 740

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +2

Query: 68  YGIGKNSASSLMLTAYVVASTAF-AISLVFW 157
           +G+G      L+ TA  +ASTAF A  ++FW
Sbjct: 475 FGLGGAVVGLLISTAAFLASTAFNAYQMIFW 505


>AF039052-3|AAF98627.1|  391|Caenorhabditis elegans Hypothetical
           protein T22D1.5 protein.
          Length = 391

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = -3

Query: 323 KDVLKITFPLKQKQPEDSKRPVASPLRRPLRM*VVKRWSSPPRATCGTLTS 171
           K V+ + FP     P  +  P  + +R P+R    + WSS    + G LTS
Sbjct: 8   KSVIDVKFPTHLFSPLATSSPKLTRMRAPIR---DQSWSSCSDDSSGNLTS 55


>AF016430-2|AAB65371.1| 1106|Caenorhabditis elegans Gex interacting
           protein protein 6 protein.
          Length = 1106

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -3

Query: 329 YEKDVLKITFPLKQKQPE 276
           Y+KDV+K+T  LK+K  E
Sbjct: 578 YKKDVIKLTHTLKEKDKE 595


>AC006682-1|AAF39956.3| 1853|Caenorhabditis elegans Hypothetical
           protein R193.2 protein.
          Length = 1853

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 19/55 (34%), Positives = 27/55 (49%)
 Frame = +2

Query: 59  SN*YGIGKNSASSLMLTAYVVASTAFAISLVFWAVSKPTSTSRTLLSVVNSISSR 223
           SN Y    NS  S  LT  + A T     + F+A      T+ T  SV+N++SS+
Sbjct: 75  SNAYTSPTNSFGSAPLTTQINAFTQNPNGVNFYAELIFPDTTATPASVINALSSQ 129


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,560,537
Number of Sequences: 27780
Number of extensions: 158343
Number of successful extensions: 515
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 515
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 651753158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)