Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1089
         (409 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    24   0.76 
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    22   3.1  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   5.4  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   5.4  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    20   9.4  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    20   9.4  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 23.8 bits (49), Expect = 0.76
 Identities = 23/67 (34%), Positives = 31/67 (46%)
 Frame = -2

Query: 399 QCF*SLLENTEPSLGCEFRRQLGLRERRVENHLPAEAKAARG*QEASCKPTETTSTNVSR 220
           + F SLL +TE      FR+       RVEN      ++A    EAS     +TS+  SR
Sbjct: 715 EMFSSLLSDTEQ----HFRQHRDSLSPRVEN------RSAIVHSEASANANSSTSSEESR 764

Query: 219 EEMEFTT 199
           EE   T+
Sbjct: 765 EEKATTS 771


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 21.8 bits (44), Expect = 3.1
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = -3

Query: 92  MRSSCRFHINLIKYKCEN*CIKCKY 18
           + S  + H N+ +Y+C N     KY
Sbjct: 32  LNSHLKSHSNVYQYRCANCTYATKY 56


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 15/58 (25%), Positives = 23/58 (39%)
 Frame = -2

Query: 249 TETTSTNVSREEMEFTTESNVRDVDVGLETAQKTNEIAKAVEATTYAVNIRDDAEFLP 76
           T T+     +  +EFT  SN R  +        TN+   +   TT     ++  E LP
Sbjct: 581 TYTSLQMAMKNPIEFTDLSNERKYEDVCVLKTDTNQSCPSPPVTTKRDGTQETEERLP 638


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -2

Query: 342 RQLGLRERRVENHLPA 295
           R++ L ERR ++HL A
Sbjct: 230 RRIVLEERRAQSHLEA 245


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 11/49 (22%), Positives = 22/49 (44%)
 Frame = +2

Query: 95  SLMLTAYVVASTAFAISLVFWAVSKPTSTSRTLLSVVNSISSRLTFVEV 241
           S+  T YV  +       +     +P+ST R +++ +N I      ++V
Sbjct: 244 SMNSTTYVTLTIVLMTMTLMTLWLEPSSTERMIIANLNFILHLFCLLDV 292


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -3

Query: 296 LKQKQPEDSKRPVASPLR 243
           L +K P  S RP+  P +
Sbjct: 877 LSKKSPSPSPRPLVGPCK 894


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,523
Number of Sequences: 438
Number of extensions: 1786
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10256061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)