Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1089
         (409 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g72150.1 68414.m08342 SEC14 cytosolic factor family protein /...    31   0.30 
At5g14270.1 68418.m01669 DNA-binding bromodomain-containing prot...    28   2.8  
At3g12200.1 68416.m01521 protein kinase family protein contains ...    28   2.8  
At1g35320.1 68414.m04378 expressed protein                             27   4.8  
At4g06526.1 68417.m00938 hypothetical protein                          26   8.5  
At4g00820.1 68417.m00113 calmodulin-binding protein-related cont...    26   8.5  
At3g47030.1 68416.m05107 F-box family protein contains F-box dom...    26   8.5  
At1g77690.1 68414.m09046 amino acid permease, putative similar t...    26   8.5  

>At1g72150.1 68414.m08342 SEC14 cytosolic factor family protein /
           phosphoglyceride transfer family protein similar to
           SEC14-like protein 2 (Alpha-tocopherol associated
           protein) (TAP) (bTAP) (Fragment) (SP:P58875) {Bos
           taurus}; similar to GI:807956 from [Saccharomyces
           cerevisiae]; contains Pfam PF00650 : CRAL/TRIO domain;
           contains Pfam PF03765 : CRAL/TRIO, N-terminus
          Length = 573

 Score = 31.1 bits (67), Expect = 0.30
 Identities = 25/91 (27%), Positives = 37/91 (40%)
 Frame = -2

Query: 378 ENTEPSLGCEFRRQLGLRERRVENHLPAEAKAARG*QEASCKPTETTSTNVSREEMEFTT 199
           E T+     E +++    E +VE   PA   AA   + +   P ET S     E+ E TT
Sbjct: 132 EETKEEEKTEEKKEETTTEVKVEEEKPA-VPAAEEEKSSEAAPVETKSEEKPEEKAEVTT 190

Query: 198 ESNVRDVDVGLETAQKTNEIAKAVEATTYAV 106
           E      + G +T +   E   +V     AV
Sbjct: 191 EKASSAEEDGTKTVEAIEESIVSVSPPESAV 221


>At5g14270.1 68418.m01669 DNA-binding bromodomain-containing protein
           contains bromodomain, INTERPRO:IPR001487
          Length = 688

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 19/74 (25%), Positives = 38/74 (51%)
 Frame = -2

Query: 345 RRQLGLRERRVENHLPAEAKAARG*QEASCKPTETTSTNVSREEMEFTTESNVRDVDVGL 166
           R +L L++++ +  L AEAKAA   +  +       +   ++ ++E   E+  R   + +
Sbjct: 544 REELELQKKKEKARLQAEAKAAEEARRKAEAQAAAEAAAEAKRKLELEREA-ARQALMEM 602

Query: 165 ETAQKTNEIAKAVE 124
           E + + NE AK +E
Sbjct: 603 EQSVELNENAKFLE 616


>At3g12200.1 68416.m01521 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069; contains
           serine/threonine protein kinase domain,
           INTERPRO:IPR002290
          Length = 571

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 17/36 (47%), Positives = 24/36 (66%), Gaps = 3/36 (8%)
 Frame = -2

Query: 249 TETTST-NVSREEME--FTTESNVRDVDVGLETAQK 151
           TET +  N   +E E  F+ ES +RDVDVG+ +AQ+
Sbjct: 395 TETPAEENALPKETENIFSEESQLRDVDVGVVSAQE 430


>At1g35320.1 68414.m04378 expressed protein
          Length = 199

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 6/47 (12%)
 Frame = -3

Query: 362 PWDVNSEGSWV------YEKDVLKITFPLKQKQPEDSKRPVASPLRR 240
           P+ V SEG W       ++ +VLKI FP   K+ +     V   LRR
Sbjct: 130 PFPVTSEGFWASSQRFCFQVEVLKIYFPTDLKESDREFGVVGKILRR 176


>At4g06526.1 68417.m00938 hypothetical protein
          Length = 506

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +3

Query: 114 TWSLLQLSRSHWSSGLSPSRRQRPARCSRW*TPSLH 221
           T   L+L+RS W  G++P    R A  S W     H
Sbjct: 434 TRGALRLNRSLWGGGVTPVATCRQALLSGWLYEKFH 469


>At4g00820.1 68417.m00113 calmodulin-binding protein-related
           contains Pfam profile PF00612: IQ calmodulin-binding
           motif
          Length = 534

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +3

Query: 132 LSRSHWSSGLSPSRRQRPARCSR 200
           L+R +  +G SPSR QRP+  SR
Sbjct: 333 LTRGNSRTGASPSRSQRPSSPSR 355


>At3g47030.1 68416.m05107 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 414

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
 Frame = +1

Query: 82  ELRIVSDVDSVRGRFYSFRDLIGLLGCLQADVNVPHVAL--GGELHLFTTYI 231
           ELR+++DVD V+     + +L      L AD++V  V +   GE+ L T++I
Sbjct: 305 ELRVLNDVDEVKWSQIIY-ELPNYWNNLPADIDVSIVGMTSAGEIVLATSHI 355


>At1g77690.1 68414.m09046 amino acid permease, putative similar to
           AUX1 (regulator of root gravitropism, putative permease)
           GI:1531758 GB:CAA67308 from [Arabidopsis thaliana];
           contains Pfam profile PF01490: Transmembrane amino acid
           transporter protein
          Length = 470

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = +2

Query: 80  KNSASSLMLTAYVVASTAFAISLVFWAVSKPTSTSRTLLSVVNSISSRLTFV 235
           K  A  L+ T YV+  T  + S V+WA      T    LS++     R T V
Sbjct: 262 KFKAIYLLATIYVLTLTLPSASAVYWAFGDKLLTHSNALSLLPKTGFRDTAV 313


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,108,867
Number of Sequences: 28952
Number of extensions: 150497
Number of successful extensions: 501
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 501
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 605614832
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)