Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1087
         (349 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11D3.10 |||nifs homolog|Schizosaccharomyces pombe|chr 1|||Ma...    26   1.5  
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc...    25   4.4  
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    24   7.8  

>SPAC11D3.10 |||nifs homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 434

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = -3

Query: 281 NAGRP-GLLGLILITFDAG-AKVSSRGSKVTPRAVVFSAHKGAGCST 147
           NA RP G+  L  +T   G +K+  +   V+  A  FS HKG GC T
Sbjct: 178 NAFRPKGIHVLADLTQQVGLSKIDVQDLNVS--ACAFSCHKGLGCPT 222


>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1190

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 214 LETLAPASKVIRISPSKPGRPAFRP 288
           ++ + P+S+   ISPSKP  P  +P
Sbjct: 523 MKRMIPSSERSSISPSKPLSPELKP 547


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2104

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +1

Query: 214  LETLAPASKVIRISPSKPGRPAFRPGR 294
            L+ L+P SK+  +  S+PG P+ R G+
Sbjct: 1403 LKPLSP-SKISNLPSSQPGSPSKRSGK 1428


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,369,392
Number of Sequences: 5004
Number of extensions: 25062
Number of successful extensions: 42
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 104153322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)