Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS1087
(349 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0545 - 15244647-15245147,15245342-15245635 31 0.19
07_01_1127 + 10456895-10457388,10457488-10458112 29 1.0
04_01_0252 - 3329712-3331061 29 1.3
03_01_0491 + 3720842-3720958,3721904-3723109 28 1.8
05_01_0238 - 1783742-1783780,1783838-1783936,1784033-1784155 27 4.0
04_03_0801 - 19828175-19828770,19828913-19828994 27 4.0
12_02_0136 + 14109557-14109661,14109742-14109804 27 5.3
10_01_0110 + 1360699-1360873,1361301-1361524 27 5.3
05_06_0278 + 26894802-26895362 26 7.1
03_02_0899 + 12257831-12257858,12258490-12258561,12259121-122604... 26 7.1
02_01_0362 + 2607097-2607371,2607766-2608612,2608842-2608910,260... 26 7.1
05_02_0006 - 5541290-5541961 26 9.3
01_01_0180 + 1533219-1533536,1533658-1533825,1535404-1535475,153... 26 9.3
>05_03_0545 - 15244647-15245147,15245342-15245635
Length = 264
Score = 31.5 bits (68), Expect = 0.19
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = -3
Query: 344 RVCLQPRCSRPPF*QRFLPGRNAGR 270
R CLQPR SRPP ++F GR+ R
Sbjct: 221 RDCLQPRQSRPPHYRQFTRGRHPNR 245
>07_01_1127 + 10456895-10457388,10457488-10458112
Length = 372
Score = 29.1 bits (62), Expect = 1.0
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = -3
Query: 344 RVCLQPRCSRPPF*QRFLPGRNAGR 270
R CLQPR SRPP ++F R+ R
Sbjct: 329 RDCLQPRQSRPPHYRQFTRSRHPNR 353
>04_01_0252 - 3329712-3331061
Length = 449
Score = 28.7 bits (61), Expect = 1.3
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -3
Query: 344 RVCLQPRCSRPPF*QRFLPGRNAGR 270
R CLQPR +RPP ++F R++ R
Sbjct: 406 RDCLQPRQNRPPHYRQFTRSRHSNR 430
>03_01_0491 + 3720842-3720958,3721904-3723109
Length = 440
Score = 28.3 bits (60), Expect = 1.8
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -3
Query: 173 AHKGAGCSTEKIFRSQPQAEMLIHEATRTLNFV 75
A G GC K+F S+ +A+ H A +L F+
Sbjct: 391 ADHGRGCKLAKVFESKDEAKASTHTAISSLPFM 423
>05_01_0238 - 1783742-1783780,1783838-1783936,1784033-1784155
Length = 86
Score = 27.1 bits (57), Expect = 4.0
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +2
Query: 161 PPCEQRILPPVASPCCRGSR 220
PPC R+L PVAS RG R
Sbjct: 6 PPCLLRVLLPVASSSSRGLR 25
>04_03_0801 - 19828175-19828770,19828913-19828994
Length = 225
Score = 27.1 bits (57), Expect = 4.0
Identities = 14/32 (43%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Frame = +2
Query: 122 GADSGRFSQCCSRPPCE-QRILPPVASPCCRG 214
G G CCS PPC Q + PP PC G
Sbjct: 182 GGGGGCKKPCCSPPPCPWQPVCPP--PPCGGG 211
>12_02_0136 + 14109557-14109661,14109742-14109804
Length = 55
Score = 26.6 bits (56), Expect = 5.3
Identities = 8/12 (66%), Positives = 11/12 (91%)
Frame = +2
Query: 161 PPCEQRILPPVA 196
PPC +R+LPP+A
Sbjct: 8 PPCRRRLLPPIA 19
>10_01_0110 + 1360699-1360873,1361301-1361524
Length = 132
Score = 26.6 bits (56), Expect = 5.3
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = -2
Query: 231 WSQGLEPRQQGDATGGS 181
W GL+PR++ D +GG+
Sbjct: 110 WDAGLQPRREDDGSGGA 126
>05_06_0278 + 26894802-26895362
Length = 186
Score = 26.2 bits (55), Expect = 7.1
Identities = 17/43 (39%), Positives = 19/43 (44%)
Frame = +2
Query: 89 SSSPHGSTFRLGADSGRFSQCCSRPPCEQRILPPVASPCCRGS 217
S P GST L D G+ PP Q PP+ SP R S
Sbjct: 111 SPQPGGSTKPLSDDDGK-PPLGIAPPSPQGNKPPITSPRLRTS 152
>03_02_0899 +
12257831-12257858,12258490-12258561,12259121-12260413,
12260593-12261224
Length = 674
Score = 26.2 bits (55), Expect = 7.1
Identities = 20/61 (32%), Positives = 25/61 (40%)
Frame = -3
Query: 320 SRPPF*QRFLPGRNAGRPGLLGLILITFDAGAKVSSRGSKVTPRAVVFSAHKGAGCSTEK 141
S PPF Q F G PGL G L + SS S + P + + H+G T
Sbjct: 239 SIPPFLQIFSNSSFLGNPGLCGPPLAECSLPSPTSSPESSLPPPSAL--PHRGKKVGTGS 296
Query: 140 I 138
I
Sbjct: 297 I 297
>02_01_0362 +
2607097-2607371,2607766-2608612,2608842-2608910,
2609968-2610202,2610454-2610536,2610924-2611046,
2611326-2611379
Length = 561
Score = 26.2 bits (55), Expect = 7.1
Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Frame = +2
Query: 95 SPHGSTFRLGADSGR-FSQCCSRPPCEQRILPPVASP 202
+P + F L A S R FS S PC PP SP
Sbjct: 28 APRSAWFMLHAPSRRSFSTSASSSPCTSPPAPPETSP 64
>05_02_0006 - 5541290-5541961
Length = 223
Score = 25.8 bits (54), Expect = 9.3
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = +1
Query: 172 AENTTARGVTLLPRLETLAPASKVIRISP-SKPGRP 276
A+ TTA T LP +P S R SP + GRP
Sbjct: 120 AQGTTAMPTTCLPVYTAGSPGSSASRSSPAASQGRP 155
>01_01_0180 +
1533219-1533536,1533658-1533825,1535404-1535475,
1536174-1536179,1536228-1536440,1537434-1537700,
1537947-1538267
Length = 454
Score = 25.8 bits (54), Expect = 9.3
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +2
Query: 149 CCSRPPCEQRILPPVASP 202
CCS PP E ++ PV+ P
Sbjct: 377 CCSLPPGELVVISPVSGP 394
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,050,384
Number of Sequences: 37544
Number of extensions: 218300
Number of successful extensions: 610
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 610
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 506210712
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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