Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS1087
(349 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_21424| Best HMM Match : HSP20 (HMM E-Value=0) 36 0.012
SB_3291| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.012
SB_38963| Best HMM Match : HSP20 (HMM E-Value=7.3e-26) 36 0.012
SB_37349| Best HMM Match : HSP20 (HMM E-Value=7.3e-26) 36 0.012
SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12) 36 0.012
SB_58906| Best HMM Match : HSP20 (HMM E-Value=3e-26) 34 0.036
SB_49292| Best HMM Match : HSP20 (HMM E-Value=1.9e-29) 34 0.036
SB_21425| Best HMM Match : HSP20 (HMM E-Value=1.9e-26) 30 0.59
SB_6033| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=1.6e-37) 29 0.78
SB_46164| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.4
SB_50579| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.2
SB_47930| Best HMM Match : Vicilin_N (HMM E-Value=1.3) 27 5.5
SB_35264| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.5
SB_22053| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.5
SB_36281| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.7
SB_19816| Best HMM Match : GRAM (HMM E-Value=0.012) 26 9.7
SB_29501| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.7
>SB_21424| Best HMM Match : HSP20 (HMM E-Value=0)
Length = 424
Score = 35.5 bits (78), Expect = 0.012
Identities = 13/26 (50%), Positives = 20/26 (76%)
Frame = +2
Query: 266 LDVQHFAPEEISVKTADGYIVVEGKH 343
LDV+ + PEEIS K +G++ V+G+H
Sbjct: 12 LDVREYRPEEISFKVENGFVKVQGRH 37
Score = 35.5 bits (78), Expect = 0.012
Identities = 13/26 (50%), Positives = 20/26 (76%)
Frame = +2
Query: 266 LDVQHFAPEEISVKTADGYIVVEGKH 343
LDV+ + PEEIS K +G++ V+G+H
Sbjct: 246 LDVREYRPEEISFKVENGFVKVQGRH 271
>SB_3291| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 760
Score = 35.5 bits (78), Expect = 0.012
Identities = 13/26 (50%), Positives = 20/26 (76%)
Frame = +2
Query: 266 LDVQHFAPEEISVKTADGYIVVEGKH 343
LDV+ + PEEIS K +G++ V+G+H
Sbjct: 12 LDVREYRPEEISFKVENGFVKVQGRH 37
>SB_38963| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)
Length = 190
Score = 35.5 bits (78), Expect = 0.012
Identities = 13/26 (50%), Positives = 20/26 (76%)
Frame = +2
Query: 266 LDVQHFAPEEISVKTADGYIVVEGKH 343
LDV+ + PEEIS K +G++ V+G+H
Sbjct: 12 LDVREYRPEEISFKVENGFVKVQGRH 37
>SB_37349| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)
Length = 190
Score = 35.5 bits (78), Expect = 0.012
Identities = 13/26 (50%), Positives = 20/26 (76%)
Frame = +2
Query: 266 LDVQHFAPEEISVKTADGYIVVEGKH 343
LDV+ + PEEIS K +G++ V+G+H
Sbjct: 12 LDVREYRPEEISFKVENGFVKVQGRH 37
>SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12)
Length = 210
Score = 35.5 bits (78), Expect = 0.012
Identities = 14/27 (51%), Positives = 21/27 (77%)
Frame = +2
Query: 266 LDVQHFAPEEISVKTADGYIVVEGKHE 346
LDV+++ PEEIS+K G I ++GKH+
Sbjct: 45 LDVKNYRPEEISLKVEHGRIKIDGKHK 71
>SB_58906| Best HMM Match : HSP20 (HMM E-Value=3e-26)
Length = 695
Score = 33.9 bits (74), Expect = 0.036
Identities = 13/26 (50%), Positives = 19/26 (73%)
Frame = +2
Query: 266 LDVQHFAPEEISVKTADGYIVVEGKH 343
LDV+ + PEEIS K +G + V+G+H
Sbjct: 13 LDVREYRPEEISFKVENGVVKVQGRH 38
>SB_49292| Best HMM Match : HSP20 (HMM E-Value=1.9e-29)
Length = 189
Score = 33.9 bits (74), Expect = 0.036
Identities = 13/26 (50%), Positives = 19/26 (73%)
Frame = +2
Query: 266 LDVQHFAPEEISVKTADGYIVVEGKH 343
LDV+ + PEEIS K +G + V+G+H
Sbjct: 12 LDVKEYRPEEISFKVENGVVKVQGRH 37
>SB_21425| Best HMM Match : HSP20 (HMM E-Value=1.9e-26)
Length = 185
Score = 29.9 bits (64), Expect = 0.59
Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Frame = +2
Query: 266 LDVQHFAPEEISVKTADGYIVVEG--KHE 346
LDV+ F PEEI+ K +G I V G +HE
Sbjct: 11 LDVREFKPEEITCKVENGKIKVSGLQRHE 39
>SB_6033| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=1.6e-37)
Length = 1052
Score = 29.5 bits (63), Expect = 0.78
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +1
Query: 199 TLLPRLETLAPASKVIRISPS-KPGRPAFRP 288
T+LP L TL PA + SPS P P++ P
Sbjct: 640 TVLPALHTLLPALHTLAASPSYSPASPSYTP 670
>SB_46164| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 784
Score = 27.9 bits (59), Expect = 2.4
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -3
Query: 236 DAGAKVSSRGSKVTPRAVVFSAHKGAGCSTEKIFRSQPQ 120
D A V + S V+ FS H G+ CST + ++P+
Sbjct: 154 DVLAAVKTPVSPVSSNGTAFSEHGGSPCSTPTVSSAEPR 192
>SB_50579| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 488
Score = 27.5 bits (58), Expect = 3.2
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +2
Query: 182 LPPVASPCCRGSRPWLQHQK 241
L P SPCC+ + W+Q+ K
Sbjct: 296 LKPTMSPCCKTTTTWVQNLK 315
>SB_47930| Best HMM Match : Vicilin_N (HMM E-Value=1.3)
Length = 769
Score = 26.6 bits (56), Expect = 5.5
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = -3
Query: 296 FLPGRNAGRPGLLGLILITFDAGAKVSSRGSKVTPRAVV 180
F PG P GL +TFD G K R ++ + V+
Sbjct: 511 FYPGEVTSGPSKAGLFNVTFDDGDKRRLRAERLIAKDVL 549
>SB_35264| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 619
Score = 26.6 bits (56), Expect = 5.5
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +1
Query: 184 TARGVTLLPRLETLAPASKVIRISPSKPGR 273
TA L RL+T+ S V+R +P+K G+
Sbjct: 324 TASSAAKLSRLKTIVNYSSVVRSAPAKGGK 353
>SB_22053| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1670
Score = 26.6 bits (56), Expect = 5.5
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = -3
Query: 296 FLPGRNAGRPGLLGLILITFDAGAKVSSRGSKVTPRAVV 180
F PG P GL +TFD G K R ++ + V+
Sbjct: 1178 FYPGEVTSGPSKAGLFNVTFDDGDKRRLRAERLIAKDVL 1216
>SB_36281| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 383
Score = 25.8 bits (54), Expect = 9.7
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +1
Query: 220 TLAPASKVIRISPSKPGRP 276
TLA S ++ +SPS PG+P
Sbjct: 121 TLASPSHLVSMSPSMPGKP 139
>SB_19816| Best HMM Match : GRAM (HMM E-Value=0.012)
Length = 138
Score = 25.8 bits (54), Expect = 9.7
Identities = 11/43 (25%), Positives = 27/43 (62%)
Frame = +1
Query: 172 AENTTARGVTLLPRLETLAPASKVIRISPSKPGRPAFRPGRNL 300
A++++++ +T+ +LE++ SK + + P+K P ++P L
Sbjct: 37 AKSSSSKHITI--KLESIVRLSKFLLVIPAKADFPRYKPAGQL 77
>SB_29501| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 418
Score = 25.8 bits (54), Expect = 9.7
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +1
Query: 220 TLAPASKVIRISPSKPGRP 276
TLA S ++ +SPS PG+P
Sbjct: 156 TLASPSHLVSMSPSMPGKP 174
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,761,188
Number of Sequences: 59808
Number of extensions: 219858
Number of successful extensions: 651
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 523129866
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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