Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1087
         (349 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g60680.1 68416.m06789 expressed protein contains Pfam profile...    28   1.5  
At5g63320.1 68418.m07946 expressed protein                             27   3.4  
At2g01960.1 68415.m00131 expressed protein                             27   3.4  
At2g45135.1 68415.m05617 expressed protein ; expression supporte...    27   4.5  
At4g04990.1 68417.m00728 expressed protein contains Pfam domain ...    26   6.0  
At1g02280.1 68414.m00169 GTP-binding protein (TOC33) identical t...    26   6.0  
At5g04885.1 68418.m00512 glycosyl hydrolase family 3 protein con...    26   7.9  

>At3g60680.1 68416.m06789 expressed protein contains Pfam profile
           PF04859: Plant protein of unknown function (DUF641
          Length = 499

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 15/39 (38%), Positives = 18/39 (46%)
 Frame = +1

Query: 175 ENTTARGVTLLPRLETLAPASKVIRISPSKPGRPAFRPG 291
           E T A G +LL   E      KV+ + P KP   A  PG
Sbjct: 41  ERTDAEGFSLLDSSEDFITDQKVVVLKPDKPLLSASSPG 79


>At5g63320.1 68418.m07946 expressed protein
          Length = 569

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +1

Query: 175 ENTTARGVTLLPRLETLAPASKVIRISPSKPGRPAFRPGR 294
           ++TT   V L+P  ET  P  ++   SP K  R AF   R
Sbjct: 36  KSTTMDAVVLVPDEETAPPERQISPDSPDKRYRAAFLKNR 75


>At2g01960.1 68415.m00131 expressed protein
          Length = 260

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 137 RFSQCCSRPPCEQRILPPVASPCC 208
           RF    + PP ++R+LP V + CC
Sbjct: 147 RFVNSYALPPYDRRLLPSVKTGCC 170


>At2g45135.1 68415.m05617 expressed protein ; expression supported
           by MPSS
          Length = 304

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +1

Query: 103 WINIS-AWG*LRKIFSVLQPAPL*AENTTARGVTL 204
           WI++S +WG LR   SVL+P  L +    + G TL
Sbjct: 270 WISLSYSWGHLRTASSVLKPPALRSLYFNSLGTTL 304


>At4g04990.1 68417.m00728 expressed protein contains Pfam domain
           PF05553: Cotton fiber expressed protein
          Length = 303

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 208 PRLETLAPASKVIRISPSKPGRP 276
           P L +L+P+S   R  PS P RP
Sbjct: 220 PSLSSLSPSSSRARRPPSSPARP 242


>At1g02280.1 68414.m00169 GTP-binding protein (TOC33) identical to
           atToc33 protein (GI:11557973) [Arabidopsis thaliana];
           Carboxyl-terminal end highly similar to GTP-binding
           protein SP:U43377, location of EST gb|AA394770 and
           gb|R30089; identical to cDNA for chloroplast atToc33
           protein GI:11557972
          Length = 297

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 21/83 (25%), Positives = 37/83 (44%)
 Frame = -3

Query: 251 ILITFDAGAKVSSRGSKVTPRAVVFSAHKGAGCSTEKIFRSQPQAEMLIHEATRTLNFVI 72
           +L T  AG+K+  +  + +  AVV++ + G     +K  ++ P  E  I    + +  V 
Sbjct: 182 LLKTIRAGSKMRKQEFEDSAIAVVYAENSGRCSKNDKDEKALPNGEAWIPNLVKAITDV- 240

Query: 71  X*PRNQRHFVVVDL*RCSLSFED 3
               NQR  + VD      S+ D
Sbjct: 241 --ATNQRKAIHVDKKMVDGSYSD 261


>At5g04885.1 68418.m00512 glycosyl hydrolase family 3 protein
           contains Pfam profiles PF00933: Glycosyl hydrolase
           family 3 N terminal domain, PF01915: Glycosyl hydrolase
           family 3 C terminal domain
          Length = 665

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -3

Query: 209 GSKVTPRAVVFSAHKGA-GCSTEKIFRSQPQAEML 108
           G+K T    + SA K A   STE +FR  P AE +
Sbjct: 462 GNKNTRGTTLLSAVKSAVDQSTEVVFRENPDAEFI 496


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,497,322
Number of Sequences: 28952
Number of extensions: 147275
Number of successful extensions: 304
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 296
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 304
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 429398688
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)