Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1083
         (538 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces...    27   1.8  
SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces ...    26   4.1  
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ...    26   4.1  
SPAC25B8.04c |||mitochondrial splicing suppressor |Schizosacchar...    25   5.4  

>SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 404

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
 Frame = +1

Query: 91  GINKCFLYLLQFE---FNPQRQQMTAYFLTPNVQDAIL*GRHH 210
           G+ K FLY +  E   FN +R++     + P+V+ A+L  R H
Sbjct: 346 GLIKDFLYAIGIEAKKFNNERKKRELEVIPPDVKSALLPARTH 388


>SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 926

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = +3

Query: 291 NYFIISKSQVLKLMTLTKKLCRILKSNVFCVLIK*N 398
           +Y +  K+ +LKL    K+ C+IL   ++ ++ + N
Sbjct: 692 DYALAEKADLLKLSENRKEQCKILTQKLYTIVFRCN 727


>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
           membrane transporter Hmt1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 830

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
 Frame = +2

Query: 221 TYWRVEA*RIMIADMISDSQLENELFHNFE-VTSIKIDDINKK 346
           T WR EA R M+        ++N+   NFE V +   DD   +
Sbjct: 426 TSWRTEARRKMVNSWRESYAVQNDAIMNFETVKNFDADDFENE 468


>SPAC25B8.04c |||mitochondrial splicing suppressor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 378

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = +2

Query: 479 SFIKNVFRKKXPT 517
           SF+KN+F+KK PT
Sbjct: 2   SFLKNLFKKKSPT 14


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,981,948
Number of Sequences: 5004
Number of extensions: 36844
Number of successful extensions: 73
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)