Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1083
         (538 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30844| Best HMM Match : zf-C2H2 (HMM E-Value=0.0028)                29   3.2  
SB_49479| Best HMM Match : R3H (HMM E-Value=0.0079)                    28   4.2  

>SB_30844| Best HMM Match : zf-C2H2 (HMM E-Value=0.0028)
          Length = 401

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 20/79 (25%), Positives = 42/79 (53%), Gaps = 2/79 (2%)
 Frame = -1

Query: 382 TQKTLLFKIRHN--FFVNVINFNTCDFEIMK*FVFQLRI*NHVCNHYSLCLYAPISFP*H 209
           +Q +L+F+I  +  +++ +IN N C +     FV++    ++   H+++C Y   SFP +
Sbjct: 319 SQSSLVFEILQSWKYYIPLINRN-CPYPFSLIFVYRGFDSHYKTCHWNVCRYCKKSFPSN 377

Query: 208 DGVLIVLRPEH*VLGNMLS 152
             + I +   H  L  M++
Sbjct: 378 HLLEIHILENHDTLFQMIA 396


>SB_49479| Best HMM Match : R3H (HMM E-Value=0.0079)
          Length = 605

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 17/57 (29%), Positives = 29/57 (50%)
 Frame = +2

Query: 197 EDAIMSRKTYWRVEA*RIMIADMISDSQLENELFHNFEVTSIKIDDINKKIMSNFKE 367
           E+A  +RK   +++A  +   D + D++ ENE F   +  +     +NK   SN KE
Sbjct: 328 ENAKSNRKRSPKIQAAILQKIDSLPDTESENETFRFSKTANKSKPVVNKTSKSNQKE 384


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,574,952
Number of Sequences: 59808
Number of extensions: 240150
Number of successful extensions: 399
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 399
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1215643300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)