Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1080
         (369 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78539-5|CAB01733.2| 1272|Caenorhabditis elegans Hypothetical pr...    27   5.5  
Z81555-7|CAB04518.1|  561|Caenorhabditis elegans Hypothetical pr...    26   7.3  
AJ131742-1|CAA10498.1|  590|Caenorhabditis elegans protein ( Cae...    26   9.7  
AF098989-4|AAK18956.2|  590|Caenorhabditis elegans Dystrobrevin ...    26   9.7  

>Z78539-5|CAB01733.2| 1272|Caenorhabditis elegans Hypothetical
           protein C31E10.8 protein.
          Length = 1272

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 113 HSFCGRYDENSRNCEMKQMTQRKL 184
           H+FC RY E  R  + + MT RK+
Sbjct: 34  HTFCNRYSEAERT-KYQMMTHRKI 56


>Z81555-7|CAB04518.1|  561|Caenorhabditis elegans Hypothetical
           protein F58E10.3a protein.
          Length = 561

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = -3

Query: 244 VLVVASVTELAGDTDKVQEVQLPLCHLLHLAVTTI 140
           VLV+    ELA    +VQEV +  CH L L +T +
Sbjct: 205 VLVLLPTRELA---QQVQEVSIDFCHSLGLKMTCL 236


>AJ131742-1|CAA10498.1|  590|Caenorhabditis elegans protein (
           Caenorhabditis elegansmRNA for dystrobrevin. ).
          Length = 590

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
 Frame = -1

Query: 228 QLRSXQGIRTRCRKCS--FLCVICF 160
           Q+RS  G R +C++C+   LC  CF
Sbjct: 268 QVRSFTGFRYKCQRCANYQLCQSCF 292


>AF098989-4|AAK18956.2|  590|Caenorhabditis elegans Dystrobrevin
           homolog protein 1 protein.
          Length = 590

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
 Frame = -1

Query: 228 QLRSXQGIRTRCRKCS--FLCVICF 160
           Q+RS  G R +C++C+   LC  CF
Sbjct: 268 QVRSFTGFRYKCQRCANYQLCQSCF 292


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,858,958
Number of Sequences: 27780
Number of extensions: 76293
Number of successful extensions: 227
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 227
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 524900642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)