Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1079
         (439 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.08c |||leucine carboxyl methyltransferase |Schizosacchar...    26   2.2  
SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces pombe...    26   2.9  
SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomy...    25   3.9  
SPBC16E9.14c |||membrane transporter|Schizosaccharomyces pombe|c...    25   5.1  
SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|c...    25   6.7  
SPAC2G11.03c |vps45||vacuolar sorting protein Vps 45|Schizosacch...    25   6.7  
SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharom...    24   8.9  
SPAC27D7.07c |smd1||Sm snRNP core protein Smd1|Schizosaccharomyc...    24   8.9  

>SPBP8B7.08c |||leucine carboxyl methyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 310

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +2

Query: 281 FVVPAKNPHAPPPVSVKTTGPVWDIXQVLK 370
           F  P++N H PP ++  T    W I  +L+
Sbjct: 30  FFSPSRNSHKPPIINRGTYVRTWSIDHILQ 59


>SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 727

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +2

Query: 287 VPAKNPHAPPPVSVKTTGPVWDIXQ 361
           +P  +P  P  +  +T GP+WD  Q
Sbjct: 671 IPRAHPQLPKNLLSQTAGPLWDEQQ 695


>SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 1/76 (1%)
 Frame = -1

Query: 382 KTSRF*DLSDVPNWAGSFNGNRWWCM-RILRRHHEAPRCPLLRCSSTGFCCCSESSLVKE 206
           KT R  DL+ +    G+   N    + + + R H  P    +R  +T F C S      E
Sbjct: 165 KTLRMIDLTGIQVCVGNMVPNEMEALQKCIERIHARPIQTSVRIDTTHFICSSTGGPEYE 224

Query: 205 VKAVLSSRIIGLMLLI 158
                +  I+GL  L+
Sbjct: 225 KAKAANIPILGLDYLL 240


>SPBC16E9.14c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 386

 Score = 25.0 bits (52), Expect = 5.1
 Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
 Frame = +3

Query: 150 KNQINNMRPMILEDRTAFTSLTNDDS-EQQQKPVEEHRRSGHRGASWCLRRILMHHHRFP 326
           +N INN   + + D+    S  N +      +P   HR+  H   S   +  L   +R P
Sbjct: 14  QNPINNNVSVTISDQLPKPSANNPNLLSVDTRPT--HRKGHHHKHSLSHQYFLPPKNRQP 71

Query: 327 LKLPAQF 347
           L++PA +
Sbjct: 72  LEIPASY 78


>SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1111

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = +3

Query: 12   RLYVSKENQKNRFKIFSNYMKK*INKNTRFIKLFLLSVRMHRSHASKNQI 161
            + Y   EN+ +   I S+  KK + +   FI+ F  SV     H S N I
Sbjct: 981  KYYNESENKFDDKAIISSVDKKEMKRAMPFIQQFKQSVINRGEHVSANSI 1030


>SPAC2G11.03c |vps45||vacuolar sorting protein Vps
           45|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 558

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +2

Query: 380 LLCKPPQQVDFEDEQEMRF 436
           L+C  PQ  DF D Q + F
Sbjct: 357 LVCNEPQSTDFNDIQRLLF 375


>SPCC132.01c ||SPCC1322.17c|DUF814 family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1021

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +2

Query: 278 SFVVPAKNPHAPPPVSVKTTGPVWDIXQ 361
           SF + AK  + PP V +   G +W + +
Sbjct: 672 SFAIRAKKNYLPPTVLIMGYGILWQLDE 699


>SPAC27D7.07c |smd1||Sm snRNP core protein Smd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 117

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +3

Query: 162 NNMRPMILEDRTAFTSLTNDDSEQQQKPVEEHRRSGHRG 278
           NN+R  IL D     +L  DDS + ++  +E  R   RG
Sbjct: 63  NNIRYYILPDSLPLDTLLIDDSTKPKQKKKEVVRGRGRG 101


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,704,645
Number of Sequences: 5004
Number of extensions: 32292
Number of successful extensions: 97
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)