Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1079
         (439 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46241-4|CAA86318.1|  837|Caenorhabditis elegans Hypothetical pr...    30   0.85 
Z68333-3|CAA92726.2| 1694|Caenorhabditis elegans Hypothetical pr...    28   3.4  
Z50797-1|CAA90671.1|  206|Caenorhabditis elegans Hypothetical pr...    28   3.4  
AY726541-1|AAU25950.1| 1694|Caenorhabditis elegans GTL-1 protein.      28   3.4  
AJ276019-1|CAC81667.1| 1681|Caenorhabditis elegans putative TRP ...    28   3.4  
U80452-7|AAB37856.1|  233|Caenorhabditis elegans Hypothetical pr...    27   7.9  
U46675-7|AAB52641.1| 1274|Caenorhabditis elegans Hypothetical pr...    27   7.9  
U23525-5|AAC46568.1|  465|Caenorhabditis elegans Yeast smf (diva...    27   7.9  

>Z46241-4|CAA86318.1|  837|Caenorhabditis elegans Hypothetical
           protein C38D4.5 protein.
          Length = 837

 Score = 29.9 bits (64), Expect = 0.85
 Identities = 16/57 (28%), Positives = 27/57 (47%)
 Frame = +3

Query: 33  NQKNRFKIFSNYMKK*INKNTRFIKLFLLSVRMHRSHASKNQINNMRPMILEDRTAF 203
           N   RFK F   + +  N+N   +K+ L  +    SH+S+N++      I+   T F
Sbjct: 710 NATTRFKKFEELLSRLPNENRETLKMLLRHLNRVASHSSQNRMQQHNLAIVFGPTLF 766


>Z68333-3|CAA92726.2| 1694|Caenorhabditis elegans Hypothetical protein
            C05C12.3 protein.
          Length = 1694

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 22/90 (24%), Positives = 37/90 (41%), Gaps = 2/90 (2%)
 Frame = +3

Query: 135  RSHASKNQINNMRPMILEDRTAFTSLTNDDSEQQQKPVEEH--RRSGHRGASWCLRRILM 308
            R+ A    I   +  +++        T+DD EQ+QK   E    R+G RG+      + M
Sbjct: 968  RNRARTMSIKKSKKNVIKPPACLKIETSDDDEQEQKKATEMYINRTGKRGSV----AVAM 1023

Query: 309  HHHRFPLKLPAQFGTSDRS*KRLVFSASHH 398
            +H    +    +  T  R      FS+S +
Sbjct: 1024 NHDDMYIDPSEELDTQTRQKSSREFSSSRN 1053


>Z50797-1|CAA90671.1|  206|Caenorhabditis elegans Hypothetical
          protein T22H6.1 protein.
          Length = 206

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = +3

Query: 27 KENQKNRFKIFSNYMKK 77
          K N++N FK+FSNY+ +
Sbjct: 43 KYNEENHFKVFSNYLNR 59


>AY726541-1|AAU25950.1| 1694|Caenorhabditis elegans GTL-1 protein.
          Length = 1694

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 22/90 (24%), Positives = 37/90 (41%), Gaps = 2/90 (2%)
 Frame = +3

Query: 135  RSHASKNQINNMRPMILEDRTAFTSLTNDDSEQQQKPVEEH--RRSGHRGASWCLRRILM 308
            R+ A    I   +  +++        T+DD EQ+QK   E    R+G RG+      + M
Sbjct: 968  RNRARTMSIKKSKKNVIKPPACLKIETSDDDEQEQKKATEMYINRTGKRGSV----AVAM 1023

Query: 309  HHHRFPLKLPAQFGTSDRS*KRLVFSASHH 398
            +H    +    +  T  R      FS+S +
Sbjct: 1024 NHDDMYIDPSEELDTQTRQKSSREFSSSRN 1053


>AJ276019-1|CAC81667.1| 1681|Caenorhabditis elegans putative TRP
            homologous cationchannel protein.
          Length = 1681

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 22/90 (24%), Positives = 37/90 (41%), Gaps = 2/90 (2%)
 Frame = +3

Query: 135  RSHASKNQINNMRPMILEDRTAFTSLTNDDSEQQQKPVEEH--RRSGHRGASWCLRRILM 308
            R+ A    I   +  +++        T+DD EQ+QK   E    R+G RG+      + M
Sbjct: 955  RNRARTMSIKKSKKNVIKPPACLKIETSDDDEQEQKKATEMYINRTGKRGSV----AVAM 1010

Query: 309  HHHRFPLKLPAQFGTSDRS*KRLVFSASHH 398
            +H    +    +  T  R      FS+S +
Sbjct: 1011 NHDDMYIDPSEELDTQTRQKSSREFSSSRN 1040


>U80452-7|AAB37856.1|  233|Caenorhabditis elegans Hypothetical
           protein C16C8.14 protein.
          Length = 233

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 19/76 (25%), Positives = 40/76 (52%)
 Frame = +3

Query: 3   QRMRLYVSKENQKNRFKIFSNYMKK*INKNTRFIKLFLLSVRMHRSHASKNQINNMRPMI 182
           Q++R+  SK   +N FK    Y++  ++KNT+ I   +L  +     + +NQ   +  ++
Sbjct: 12  QKLRVETSKI--QNEFKEKPGYVEDKLHKNTQEICQQILKKQGKSQKSQENQNAFIENLM 69

Query: 183 LEDRTAFTSLTNDDSE 230
            E +TA + L   +++
Sbjct: 70  SELKTAKSKLNETENQ 85


>U46675-7|AAB52641.1| 1274|Caenorhabditis elegans Hypothetical protein
            F35A5.1 protein.
          Length = 1274

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 12/22 (54%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
 Frame = +2

Query: 290  PAKNPH-APPPVSVKTTGPVWD 352
            PAK P  AP P + K   PVWD
Sbjct: 1135 PAKKPEKAPEPAAPKKWKPVWD 1156


>U23525-5|AAC46568.1|  465|Caenorhabditis elegans Yeast smf
           (divalent cation transporter)homolog protein 2 protein.
          Length = 465

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -3

Query: 92  IFIYLFFHIVTENFKTIFLVFL 27
           I +Y  F  VTENF T +L+F+
Sbjct: 384 INVYFIFQYVTENFGTGWLIFV 405


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,600,626
Number of Sequences: 27780
Number of extensions: 190800
Number of successful extensions: 664
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 664
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 745968860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)