Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS1079
(439 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g27850.1 68417.m03999 proline-rich family protein contains pr... 29 1.0
At2g30910.2 68415.m03768 transducin family protein / WD-40 repea... 28 3.2
At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP1... 27 4.2
At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical... 27 4.2
At4g19170.1 68417.m02829 9-cis-epoxycarotenoid dioxygenase, puta... 27 5.5
At2g40030.1 68415.m04919 DNA-directed RNA polymerase alpha subun... 27 5.5
At5g65300.1 68418.m08214 expressed protein 27 7.3
At4g00150.1 68417.m00015 scarecrow-like transcription factor 6 (... 27 7.3
At2g31300.1 68415.m03821 transducin family protein / WD-40 repea... 26 9.7
At2g30910.1 68415.m03767 transducin family protein / WD-40 repea... 26 9.7
At1g30220.1 68414.m03697 sugar transporter family protein simila... 26 9.7
>At4g27850.1 68417.m03999 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 577
Score = 29.5 bits (63), Expect = 1.0
Identities = 14/50 (28%), Positives = 23/50 (46%)
Frame = -1
Query: 313 WCMRILRRHHEAPRCPLLRCSSTGFCCCSESSLVKEVKAVLSSRIIGLML 164
+C+R R H PRC +LRC F ++ K + +S + + L
Sbjct: 472 YCVRRSYRVHHKPRCRILRCRFRSFNSITDKGHYKAAVVLAASLVCVISL 521
>At2g30910.2 68415.m03768 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400) (1
weak); similar to ARP2/3 complex 41 kDa subunit
(P41-ARC) (Actin-related protein 2/3 complex subunit 1B)
(SP:O88656) [Rattus norvegicus]
Length = 378
Score = 27.9 bits (59), Expect = 3.2
Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 8/63 (12%)
Frame = -1
Query: 322 NRWWCMRILRRHHEA--------PRCPLLRCSSTGFCCCSESSLVKEVKAVLSSRIIGLM 167
N WW +++R+ HE+ P LL +ST C S+ +K V + + G
Sbjct: 132 NNWWVSKLIRKRHESSVTSVAWHPNNVLLATTSTDGKCRVFSTFIKGVDTKYAHYLNGAF 191
Query: 166 LLI 158
L+
Sbjct: 192 FLL 194
>At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP19)
non-consensus splice site at the intron:exon boundary
(AT:exon)
Length = 247
Score = 27.5 bits (58), Expect = 4.2
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = +2
Query: 272 PWSFVVPAKNPHAPPPVSVKTTGPVWDIXQVLKAARLLCKPPQ 400
P S P +P PPP T+ P + V+ A +PPQ
Sbjct: 60 PVSAAQPPASPVTPPPAVTPTSPPAPKVAPVISPATPPPQPPQ 102
>At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical to
DNA Helicase [Arabidopsis thaliana] GI:11121449
Length = 1188
Score = 27.5 bits (58), Expect = 4.2
Identities = 12/48 (25%), Positives = 23/48 (47%)
Frame = -1
Query: 310 CMRILRRHHEAPRCPLLRCSSTGFCCCSESSLVKEVKAVLSSRIIGLM 167
C R L+ H + C T CCS SL+ + +++ +++ L+
Sbjct: 833 CRRFLQLVHLGEKFDSTNCKKTCDNCCSSQSLIDKDVTLITRQLVELV 880
>At4g19170.1 68417.m02829 9-cis-epoxycarotenoid dioxygenase,
putative / neoxanthin cleavage enzyme, putative /
carotenoid cleavage dioxygenase, putative similar to
9-cis-epoxycarotenoid dioxygenase [Phaseolus
vulgaris][GI:6715257]; neoxanthin cleavage enzyme,
Lycopersicon esculentum, PATX:E325797
Length = 595
Score = 27.1 bits (57), Expect = 5.5
Identities = 13/54 (24%), Positives = 29/54 (53%)
Frame = +3
Query: 111 FLLSVRMHRSHASKNQINNMRPMILEDRTAFTSLTNDDSEQQQKPVEEHRRSGH 272
F L + R +S + + ++E+R+ T+ +D+++++ KP H R+ H
Sbjct: 14 FSLHHSLLRRRSSSPTLLRINSAVVEERSPITN-PSDNNDRRNKPKTLHNRTNH 66
>At2g40030.1 68415.m04919 DNA-directed RNA polymerase alpha subunit
family protein contains InterPro accession IPR000722:
RNA polymerase, alpha subunit
Length = 888
Score = 27.1 bits (57), Expect = 5.5
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 5/32 (15%)
Frame = +2
Query: 311 PPPVSVKTT--GPVWDIXQVLKAA---RLLCK 391
PPP K++ GP W + Q+L+ A RL CK
Sbjct: 476 PPPALRKSSKSGPAWTVFQILQLAFPERLSCK 507
>At5g65300.1 68418.m08214 expressed protein
Length = 150
Score = 26.6 bits (56), Expect = 7.3
Identities = 13/51 (25%), Positives = 25/51 (49%)
Frame = +3
Query: 153 NQINNMRPMILEDRTAFTSLTNDDSEQQQKPVEEHRRSGHRGASWCLRRIL 305
+++ N + R++ +S T S V++HRR+G S+ +R L
Sbjct: 24 SRLPNTTSYYIVHRSSSSSSTTVSSSPSSPAVKDHRRAGSMSMSFAVREAL 74
>At4g00150.1 68417.m00015 scarecrow-like transcription factor 6
(SCL6)
Length = 558
Score = 26.6 bits (56), Expect = 7.3
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +2
Query: 305 HAPPPVSVKTTGPVWDIXQVLKAARLL 385
H PPP GPV Q++KAA ++
Sbjct: 190 HTPPPAKRLNPGPVGITEQLVKAAEVI 216
>At2g31300.1 68415.m03821 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
identical to putative ARP2/3 protein complex subunit p41
(GI:4432825)[Arabidopsis thaliana]; similar to ARP2/3
complex 41 kDa subunit (P41-ARC) (Actin-related protein
2/3 complex subunit 1B) (SP:Q9WV32) [Mus musculus]
Length = 378
Score = 26.2 bits (55), Expect = 9.7
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 8/48 (16%)
Frame = -1
Query: 322 NRWWCMRILRRHHEA--------PRCPLLRCSSTGFCCCSESSLVKEV 203
N WW +++R+ HE+ P LL +ST C S+ +K V
Sbjct: 132 NNWWVSKLIRKRHESSVTSVAWHPNNVLLATTSTDGKCRVFSTFIKGV 179
>At2g30910.1 68415.m03767 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400) (1
weak); similar to ARP2/3 complex 41 kDa subunit
(P41-ARC) (Actin-related protein 2/3 complex subunit 1B)
(SP:O88656) [Rattus norvegicus]
Length = 378
Score = 26.2 bits (55), Expect = 9.7
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 8/48 (16%)
Frame = -1
Query: 322 NRWWCMRILRRHHEA--------PRCPLLRCSSTGFCCCSESSLVKEV 203
N WW +++R+ HE+ P LL +ST C S+ +K V
Sbjct: 132 NNWWVSKLIRKRHESSVTSVAWHPNNVLLATTSTDGKCRVFSTFIKGV 179
>At1g30220.1 68414.m03697 sugar transporter family protein similar
to SP|Q96QE2 Proton myo-inositol co-transporter (Hmit)
[Homo sapiens]; contains Pfam profile PF00083: major
facilitator superfamily protein
Length = 580
Score = 26.2 bits (55), Expect = 9.7
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = -1
Query: 382 KTSRF*DLSDVPNWAGSFNGNRWWCMRILRRHHEAPRCPLLRCSS 248
+T RF ++S P++ + N N W CM L+ +P C CSS
Sbjct: 376 ETQRFNNIS-CPDYKSAMNTNAWDCMTCLKA--SSPSCGY--CSS 415
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,995,526
Number of Sequences: 28952
Number of extensions: 176029
Number of successful extensions: 556
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 556
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 692941200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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