Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1078
         (379 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       22   1.8  
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    21   5.4  
AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase ...    20   7.2  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    20   7.2  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    20   7.2  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    20   7.2  

>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 22.2 bits (45), Expect = 1.8
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +2

Query: 275 PSFTVKYMHSNAN 313
           P FT KY H N N
Sbjct: 58  PGFTGKYCHENIN 70


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 7/15 (46%), Positives = 8/15 (53%)
 Frame = -2

Query: 153 YGSRHFSTGVALVHH 109
           YGS H  +G    HH
Sbjct: 11  YGSHHHQSGSVAGHH 25


>AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase
           protein.
          Length = 268

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +3

Query: 120 AQHLLKSGVTRNEMIAAITNRLH 188
           A HLL   + +N+ + A   R+H
Sbjct: 170 ALHLLVDYMKKNKTLGAACGRIH 192


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +3

Query: 120 AQHLLKSGVTRNEMIAAITNRLH 188
           A HLL   + +N+ + A   R+H
Sbjct: 484 ALHLLVDYMKKNKTLGAACGRIH 506


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +3

Query: 120 AQHLLKSGVTRNEMIAAITNRLH 188
           A HLL   + +N+ + A   R+H
Sbjct: 717 ALHLLVDYMKKNKTLGAACGRIH 739


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +3

Query: 120 AQHLLKSGVTRNEMIAAITNRLH 188
           A HLL   + +N+ + A   R+H
Sbjct: 717 ALHLLVDYMKKNKTLGAACGRIH 739


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,774
Number of Sequences: 336
Number of extensions: 1454
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  7803226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)