Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1078
         (379 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    27   0.74 
SPAC22F8.12c |shf1||small histone ubiquitination factor Shf1|Sch...    25   3.0  
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb...    24   6.9  
SPCC1442.16c |zta1|SPCC285.01c|NADPH quinone oxidoreductase/ARE-...    24   6.9  
SPBP4G3.02 |pho1||acid phosphatase Pho1 |Schizosaccharomyces pom...    24   6.9  
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr...    24   6.9  
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    24   9.1  

>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2100

 Score = 27.5 bits (58), Expect = 0.74
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +3

Query: 126  HLLKSGVTRNEMIAAITNRLHAEAMASYPRMFV 224
            HLL++  T +E  AA   +LH + + S P + +
Sbjct: 1596 HLLRNSATNDETKAAFVYQLHKQGILSEPELCI 1628


>SPAC22F8.12c |shf1||small histone ubiquitination factor
           Shf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 165

 Score = 25.4 bits (53), Expect = 3.0
 Identities = 11/42 (26%), Positives = 23/42 (54%)
 Frame = +1

Query: 223 SANPRLENSSEEFVDIEAKFYSEVHALECKYEKLYKLFMKSE 348
           S     ENSS+  +++E ++  +VH  E     +Y+  ++S+
Sbjct: 109 SCKSACENSSQSLLNVEQQYAQQVHFWEKIRTDIYREGLRSD 150


>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1207

 Score = 24.2 bits (50), Expect = 6.9
 Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
 Frame = +1

Query: 13  VRVKY*IWVPSNVLV--TTTHPKWSL 84
           +R+K  +WV +NVL+  T  H K++L
Sbjct: 535 IRIKSAVWVENNVLLYATLDHLKYAL 560


>SPCC1442.16c |zta1|SPCC285.01c|NADPH quinone
           oxidoreductase/ARE-binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 329

 Score = 24.2 bits (50), Expect = 6.9
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3

Query: 191 CMKAICDGRYHFITGHATFQ 132
           C+K +    + +ITGHA F+
Sbjct: 255 CLKFVRPSLFGYITGHAVFE 274


>SPBP4G3.02 |pho1||acid phosphatase Pho1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 453

 Score = 24.2 bits (50), Expect = 6.9
 Identities = 10/35 (28%), Positives = 16/35 (45%)
 Frame = +1

Query: 199 WHPTPECSSANPRLENSSEEFVDIEAKFYSEVHAL 303
           W P  E ++A+    +   E  D+  +FY   H L
Sbjct: 115 WTPVIEAANADALSSSGRVELFDMGRQFYERYHEL 149


>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 583

 Score = 24.2 bits (50), Expect = 6.9
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +2

Query: 167 GHHKSPSCRS 196
           GHHK+P CR+
Sbjct: 485 GHHKNPKCRA 494


>SPAC18G6.05c |||translation elongation regulator Gcn1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
 Frame = -3

Query: 266  STNSSEEFSRRGFADEHSGV---GCHRFCMKAICDGRYHFIT 150
            S + SE+F +R FA EH  V    C     + + D   HFIT
Sbjct: 2141 SFSESEDFRKRLFAAEHMLVFFQNCKLDYYRYVGDWVRHFIT 2182


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,495,081
Number of Sequences: 5004
Number of extensions: 25414
Number of successful extensions: 62
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 122233080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)