Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1078
         (379 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56841| Best HMM Match : No HMM Matches (HMM E-Value=.)              39   0.002
SB_16619| Best HMM Match : Dynamitin (HMM E-Value=1.1)                 28   2.9  
SB_46756| Best HMM Match : zf-C2H2 (HMM E-Value=4.60046e-42)           26   8.8  

>SB_56841| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 340

 Score = 38.7 bits (86), Expect = 0.002
 Identities = 16/27 (59%), Positives = 19/27 (70%)
 Frame = +1

Query: 256 EFVDIEAKFYSEVHALECKYEKLYKLF 336
           E   +E KFY EVHALECKY + +K F
Sbjct: 141 ECCKLEGKFYEEVHALECKYAEKFKPF 167


>SB_16619| Best HMM Match : Dynamitin (HMM E-Value=1.1)
          Length = 667

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -2

Query: 204 MPSLLHEGDL*WPLSFHYGSRHFSTGVALVH 112
           +PS +HE D   PL F +GS +  T + L H
Sbjct: 209 LPSSIHEADDMLPLCFEFGSLNSQTLLMLEH 239


>SB_46756| Best HMM Match : zf-C2H2 (HMM E-Value=4.60046e-42)
          Length = 1078

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +1

Query: 214 ECSSANPRLENSSEEFVDIEAKFYSEVH 297
           E  +A+   E+SSEE +  + KFY +VH
Sbjct: 34  ETDTASEGEEDSSEEIMFCDKKFYWQVH 61


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,508,730
Number of Sequences: 59808
Number of extensions: 201226
Number of successful extensions: 386
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 385
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 632178915
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)