Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1078
         (379 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40800-9|AAA81494.1|  316|Caenorhabditis elegans Hypothetical pr...    29   0.83 
L13200-4|AAA28191.2|  645|Caenorhabditis elegans Hypothetical pr...    27   3.4  
U23412-2|AAN65294.1|  678|Caenorhabditis elegans Glycyl trna syn...    27   4.5  
U23412-1|AAK21465.2|  742|Caenorhabditis elegans Glycyl trna syn...    27   4.5  
AF043702-3|AAK21496.2|  474|Caenorhabditis elegans Hypothetical ...    27   4.5  

>U40800-9|AAA81494.1|  316|Caenorhabditis elegans Hypothetical
           protein D2096.8 protein.
          Length = 316

 Score = 29.5 bits (63), Expect = 0.83
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +1

Query: 238 LENSSEEFVDIEAKFYSEVHALECKYEKLYK 330
           L+N   + + IE+ FY  VH LE ++E  +K
Sbjct: 33  LKNLQMKTIQIESDFYKRVHELEIEFEGKFK 63


>L13200-4|AAA28191.2|  645|Caenorhabditis elegans Hypothetical
           protein ZK1236.1 protein.
          Length = 645

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = -2

Query: 303 ECMYFTVKLGLNVDKLL 253
           EC++ + K GLNVDK+L
Sbjct: 188 ECLHISAKSGLNVDKVL 204


>U23412-2|AAN65294.1|  678|Caenorhabditis elegans Glycyl trna
           synthetase protein1, isoform b protein.
          Length = 678

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
 Frame = -3

Query: 302 SACTSL*NLASMSTNSSEEFSRRGFADEHSG---VGCHRFCMKAICDGR 165
           SAC  L    +      E  +++  A+E  G     CH+F MK   DGR
Sbjct: 323 SACNQLDGAPAQEVAIGEAVAKKTVANETLGYYMARCHQFLMKVGIDGR 371


>U23412-1|AAK21465.2|  742|Caenorhabditis elegans Glycyl trna
           synthetase protein1, isoform a protein.
          Length = 742

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
 Frame = -3

Query: 302 SACTSL*NLASMSTNSSEEFSRRGFADEHSG---VGCHRFCMKAICDGR 165
           SAC  L    +      E  +++  A+E  G     CH+F MK   DGR
Sbjct: 387 SACNQLDGAPAQEVAIGEAVAKKTVANETLGYYMARCHQFLMKVGIDGR 435


>AF043702-3|AAK21496.2|  474|Caenorhabditis elegans Hypothetical
           protein W03D8.1 protein.
          Length = 474

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 150 RNEMIAAITNRLHAEAMASYPRMFVGE 230
           RN  + +I N L  E MA YP   +GE
Sbjct: 52  RNTFMKSINNVLEMEKMADYPAELLGE 78


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,405,072
Number of Sequences: 27780
Number of extensions: 146639
Number of successful extensions: 345
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 331
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 345
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 557037416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)