Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1078
         (379 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g19480.1 68415.m02277 nucleosome assembly protein (NAP), puta...    34   0.027
At5g56950.1 68418.m07109 nucleosome assembly protein (NAP), puta...    30   0.59 
At4g26110.1 68417.m03759 nucleosome assembly protein (NAP), puta...    29   1.0  
At3g13782.1 68416.m01740 nucleosome assembly protein (NAP) famil...    29   1.4  
At5g41040.2 68418.m04989 transferase family protein similar to h...    28   2.4  
At5g41040.1 68418.m04988 transferase family protein similar to h...    28   2.4  
At4g15180.1 68417.m02328 SET domain-containing protein contains ...    27   5.5  
At1g67890.1 68414.m07752 protein kinase family protein contains ...    27   5.5  
At4g39170.1 68417.m05547 SEC14 cytosolic factor, putative / phos...    26   7.2  
At1g67570.1 68414.m07698 expressed protein                             26   7.2  
At2g19110.1 68415.m02231 ATPase E1-E2 type family protein / halo...    26   9.6  

>At2g19480.1 68415.m02277 nucleosome assembly protein (NAP),
           putative similar to nucleosome assembly protein 1
           [Glycine max] GI:1161252; contains Pfam profile PF00956:
           Nucleosome assembly protein (NAP)
          Length = 379

 Score = 34.3 bits (75), Expect = 0.027
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = +1

Query: 208 TPECSSANPRLENSSEEFVDIEAKFYSEVHALECKYEKLYK 330
           TP        L     ++ ++EAKF+ E  ALE KY+KLY+
Sbjct: 48  TPPVRKRVEFLREIQNQYDEMEAKFFEERAALEAKYQKLYQ 88


>At5g56950.1 68418.m07109 nucleosome assembly protein (NAP),
           putative similar to nucleosome assembly protein 1
           [Glycine max] GI:1161252; contains Pfam profile PF00956:
           Nucleosome assembly protein (NAP)
          Length = 374

 Score = 29.9 bits (64), Expect = 0.59
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = +1

Query: 265 DIEAKFYSEVHALECKYEKLYK 330
           +IE KF  E  ALE KY+KLY+
Sbjct: 67  EIETKFREERAALEAKYQKLYQ 88


>At4g26110.1 68417.m03759 nucleosome assembly protein (NAP),
           putative similar to nucleosome assembly protein 1
           [Glycine max] GI:1161252; contains Pfam profile PF00956:
           Nucleosome assembly protein (NAP)
          Length = 372

 Score = 29.1 bits (62), Expect = 1.0
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +1

Query: 208 TPECSSANPRLENSSEEFVDIEAKFYSEVHALECKYEKLYK-LFMK 342
           TP        L +   +  ++EAKF  E   LE KY+ LY+ L++K
Sbjct: 48  TPNVRKRVDALRDIQSQHDELEAKFREERAILEAKYQTLYQPLYVK 93


>At3g13782.1 68416.m01740 nucleosome assembly protein (NAP) family
           protein similar to nucleosome assembly protein 1
           [Glycine max] GI:1161252; contains Pfam profile PF00956:
           Nucleosome assembly protein (NAP)
          Length = 329

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +1

Query: 265 DIEAKFYSEVHALECKYEKLYK-LFMK 342
           ++E KF +E  ALE  Y+ LYK LF K
Sbjct: 84  ELEEKFLAEKSALEATYDNLYKPLFAK 110


>At5g41040.2 68418.m04989 transferase family protein similar to
           hypersensitivity-related gene product HSR201 - Nicotiana
           tabacum, EMBL:X95343; contains Pfam transferase family
           domain PF00248
          Length = 441

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = +1

Query: 232 PRLENSSEEFVDIEAKFYSEVHALECKYEKLYKLF 336
           P++EN  +EF +IE K  S +++L  K   LY+ F
Sbjct: 209 PKIENLHQEFEEIEDK--SNINSLYTKEPTLYRSF 241


>At5g41040.1 68418.m04988 transferase family protein similar to
           hypersensitivity-related gene product HSR201 - Nicotiana
           tabacum, EMBL:X95343; contains Pfam transferase family
           domain PF00248
          Length = 457

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = +1

Query: 232 PRLENSSEEFVDIEAKFYSEVHALECKYEKLYKLF 336
           P++EN  +EF +IE K  S +++L  K   LY+ F
Sbjct: 225 PKIENLHQEFEEIEDK--SNINSLYTKEPTLYRSF 257


>At4g15180.1 68417.m02328 SET domain-containing protein contains Pfam
            profile PF00856: SET domain
          Length = 2326

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 191  CMKAICDGRYHFITGHATFQQVLR 120
            C   +C G Y  +TG   FQ+VL+
Sbjct: 1911 CGSQVCRGSYLNLTGEGAFQKVLK 1934


>At1g67890.1 68414.m07752 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 765

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 11/44 (25%), Positives = 21/44 (47%)
 Frame = +1

Query: 169 PSQIAFMQKRWHPTPECSSANPRLENSSEEFVDIEAKFYSEVHA 300
           P  IA M+  WH  P+C    P  +   ++  +++ K+  +  A
Sbjct: 711 PQWIALMESCWHSEPQC---RPSFQELMDKLRELQRKYTIQFQA 751


>At4g39170.1 68417.m05547 SEC14 cytosolic factor, putative /
           phosphoglyceride transfer protein, putative similar to
           phosphatidylinositol transfer-like protein IV
           (GI:14486707) [Lotus japonicus] and
           phosphatidylinositol-phosphatidylcholine transfer
           protein SEC14, Yarrowia lipolytica, PIR2:S43745;contains
           Pfam PF00650 : CRAL/TRIO domain; contains Pfam PF03765 :
           CRAL/TRIO, N-terminus
          Length = 614

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +1

Query: 268 IEAKFYSEVHALECKYE-KLYKLFMKSEL 351
           ++ K  S++H L CKY+ KL ++   SEL
Sbjct: 284 LDPKTTSKIHVLGCKYQSKLLEIIDSSEL 312


>At1g67570.1 68414.m07698 expressed protein
          Length = 456

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = +1

Query: 166 RPSQIAFMQKRWHPTPECSSANPRLENSSEEFVDIEA 276
           R   IA +  RWH    CSS +     +S   V +EA
Sbjct: 326 RAQAIASVASRWHAMMSCSSTDSTQIRASPSGVHLEA 362


>At2g19110.1 68415.m02231 ATPase E1-E2 type family protein / haloacid
            dehalogenase-like hydrolase family protein /
            heavy-metal-associated domain-containing protein similar
            to cadmium efflux pump protein from Geobacillus
            stearothermophilus [GI:16753175], cadmium resistance
            protein B from Staphylococcus aureus [GI:14020985];
            T20K24.13 has been merged with T20K24.12 per suggestion
            of Dr. Kristian Axelsen (axe@biobase.dk)
          Length = 1172

 Score = 25.8 bits (54), Expect = 9.6
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = -3

Query: 236  RGFADEHSGVGCHRFCMKAICDGRYH 159
            R  A  HSG  C R   K +C  R+H
Sbjct: 1135 RDRAKRHSGKSCCRSYAKELCSHRHH 1160


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,862,363
Number of Sequences: 28952
Number of extensions: 135255
Number of successful extensions: 323
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 318
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 323
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 517767328
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)