Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS1075
(648 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 116 2e-27
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 64 2e-11
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 50 4e-07
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 49 7e-07
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 40 2e-04
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 37 0.003
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 36 0.005
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 30 0.33
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p... 28 1.0
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 1.8
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 27 1.8
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 3.1
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 26 5.4
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 26 5.4
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 116 bits (280), Expect = 2e-27
Identities = 51/60 (85%), Positives = 57/60 (95%)
Frame = +2
Query: 89 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDGHRAK 268
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKDSYVGD ++K
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61
Score = 105 bits (252), Expect = 5e-24
Identities = 45/47 (95%), Positives = 45/47 (95%)
Frame = +1
Query: 256 AQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVL 396
AQSKRGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP L
Sbjct: 58 AQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCL 104
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 63.7 bits (148), Expect = 2e-11
Identities = 27/48 (56%), Positives = 35/48 (72%)
Frame = +2
Query: 107 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVG 250
+ +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM QKD +VG
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVG 59
Score = 58.4 bits (135), Expect = 8e-10
Identities = 24/48 (50%), Positives = 35/48 (72%), Gaps = 1/48 (2%)
Frame = +1
Query: 256 AQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYN-ELRVAPEEHPVL 396
AQ+ RG+L ++ PIE GI+ NW DME+IW + + + +L PEEHP+L
Sbjct: 62 AQNLRGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLL 109
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 49.6 bits (113), Expect = 4e-07
Identities = 27/55 (49%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Frame = +2
Query: 95 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGD 253
E A +V+DNG+G K G+A D+ PR FPSIVGRP R + + KD VGD
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGD 56
Score = 49.6 bits (113), Expect = 4e-07
Identities = 16/47 (34%), Positives = 35/47 (74%)
Frame = +1
Query: 256 AQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVL 396
A++ R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P +L
Sbjct: 58 AEAVRSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKIL 104
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 48.8 bits (111), Expect = 7e-07
Identities = 17/36 (47%), Positives = 23/36 (63%)
Frame = +1
Query: 280 TLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEH 387
+L YPI HG + NWD ME+ W + + LR PE+H
Sbjct: 89 SLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDH 124
Score = 44.4 bits (100), Expect = 1e-05
Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 5/56 (8%)
Frame = +2
Query: 107 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG--MGQKDSYV---GDGH 259
+++DNG+G K G+AG+DAP VFP+++ R G G + K SY+ G GH
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIA-TRSAGASSGPAVSSKPSYMASKGSGH 62
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 40.3 bits (90), Expect = 2e-04
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +2
Query: 92 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 193
+EV+A+V+D GS + GF+G+D P+ V PS G
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42
Score = 36.3 bits (80), Expect = 0.004
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +1
Query: 277 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVL 396
+ +K I +G V NWD +W + +L+ P EHP+L
Sbjct: 63 MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPIL 102
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 36.7 bits (81), Expect = 0.003
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +2
Query: 92 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 193
EE+ +LV+D GS + G+AG+++P + PS G
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPSYYG 41
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 35.9 bits (79), Expect = 0.005
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +2
Query: 107 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 202
LV+DNGS +AG+ G+ P+ VF ++V R R
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58
Score = 33.5 bits (73), Expect = 0.027
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +1
Query: 292 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPV 393
P E +++NWD ME++ +TF +L + EHP+
Sbjct: 86 PFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPI 118
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 29.9 bits (64), Expect = 0.33
Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = -1
Query: 249 PT*ESFCPI-PTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSS 88
PT S P+ PT+ P P N S P PL+TTN TS+S
Sbjct: 401 PTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455
>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 277
Score = 28.3 bits (60), Expect = 1.0
Identities = 18/66 (27%), Positives = 29/66 (43%)
Frame = -1
Query: 324 IPVSDDSVFDGVFEGQDTSFALCPSPT*ESFCPIPTITP*WRGLPTIEGNTARGASSPAK 145
+P + +V +TSFAL + S PT + P +E + +S+PA
Sbjct: 63 LPTQEAAVETNASASHETSFALPTTSPAASLSISPTKSAAVSSEPNVEADVKSLSSTPAA 122
Query: 144 PALHIP 127
P L+ P
Sbjct: 123 PQLNSP 128
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.5 bits (58), Expect = 1.8
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 7/67 (10%)
Frame = +3
Query: 372 RPRGTPSP--VTEAPSTPXATERSDQIMFEH*HAACTSH-----QAVSRVPSVYTVCLNP 530
R +GTPSP V A STP A + QI +A +S+ ++S P+V +P
Sbjct: 1253 RQKGTPSPAPVNSATSTPVAAPTAQQIQPGKQASAVSSNVPAVSASISTPPAVVPTVQHP 1312
Query: 531 GRVPHVP 551
+P
Sbjct: 1313 QPTKQIP 1319
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 27.5 bits (58), Expect = 1.8
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -2
Query: 251 LLHKSPSVPYRPSRPDGGAFPRSRGTR 171
L+ K+PS PY SRP A S TR
Sbjct: 309 LISKAPSYPYSSSRPSASASLASSPTR 335
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.6 bits (56), Expect = 3.1
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = -1
Query: 252 SPT*ESFC--PIPTITP*WRGLPTIEGNTARGASSPAKPAL 136
S T +SF P+PT P LPT NT + P+ PAL
Sbjct: 64 SNTPKSFAAPPVPTGAP---SLPTSSNNTQQAEERPSMPAL 101
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 25.8 bits (54), Expect = 5.4
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -2
Query: 134 TYRSHCLLPTRQLLRRTS*ISEI 66
TYR H +PT LL T +SEI
Sbjct: 168 TYRDHDAIPTATLLNPTLDVSEI 190
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 25.8 bits (54), Expect = 5.4
Identities = 7/21 (33%), Positives = 13/21 (61%)
Frame = +1
Query: 292 PIEHGIVTNWDDMEKIWHHTF 354
PI+ G V +W+ ++ W H +
Sbjct: 113 PIQRGRVVDWEALKAFWKHLY 133
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,858,983
Number of Sequences: 5004
Number of extensions: 63380
Number of successful extensions: 179
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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