Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1072
         (598 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    24   1.3  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    23   2.3  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    23   2.3  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    22   4.0  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    22   4.0  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    22   5.3  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    21   6.9  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   6.9  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   9.2  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +1

Query: 283 QENISLQYFYHDL-FEI*FVYGIKLIIICTV 372
           ++N+ +   Y D  + I F Y I LI++CTV
Sbjct: 802 EDNLLVCNSYVDASYMIAFAYPIMLIVVCTV 832


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +3

Query: 345 NKIDNNMHCSKYRNLXLKNMNFNK 416
           N I NN +   Y N    N N+NK
Sbjct: 87  NTIHNNNYKYNYNNNNYNNNNYNK 110


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +3

Query: 345 NKIDNNMHCSKYRNLXLKNMNFNK 416
           N I NN +   Y N    N N+NK
Sbjct: 87  NTIHNNNYKYNYNNNNYNNNNYNK 110


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 8/25 (32%), Positives = 11/25 (44%)
 Frame = +3

Query: 360 NMHCSKYRNLXLKNMNFNKPNKTNE 434
           N  C +Y N    N N +  N  N+
Sbjct: 416 NTRCGRYHNQNAGNQNADNQNADNQ 440


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -1

Query: 169 HLHQVKLHKRDNKHTFQRVWRDAQ 98
           ++ +VK  K  +KH  Q  W D +
Sbjct: 325 YIPKVKNKKAGSKHLLQNTWLDPE 348


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 14/44 (31%), Positives = 17/44 (38%)
 Frame = +1

Query: 88  PKNTEHRARHAGKCACCPACVTLLGEGATCKIYSKELGETPSAV 219
           P N    A  A KCA       L  E A C+   K +  +P  V
Sbjct: 153 PMNRNRPAYLASKCALTTLTDCLRSELAQCESNIKVISISPDLV 196


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
 Frame = +3

Query: 312 SRPVRNIICVRNKI---DNNMHCSKYRNLXLKNMNFNKPNK 425
           SR  + I  + NK    +NN + + Y N    N N+N   K
Sbjct: 76  SREPKIISSLSNKTIHNNNNYNNNNYNNYNYNNNNYNNYKK 116


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 8/23 (34%), Positives = 11/23 (47%)
 Frame = +1

Query: 106 RARHAGKCACCPACVTLLGEGAT 174
           + RH     CC  C  L G G++
Sbjct: 3   KGRHVVMSCCCWCCDNLGGPGSS 25


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -3

Query: 587 QLGWLEFFYPKAFNN 543
           QL W EFFY  A  N
Sbjct: 306 QLLWREFFYCAATKN 320


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,563
Number of Sequences: 438
Number of extensions: 3804
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)