Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1071
         (359 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...   116   1e-27
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    25   3.5  
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    25   4.7  
SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni...    24   8.2  
SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces pom...    24   8.2  

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score =  116 bits (279), Expect = 1e-27
 Identities = 54/86 (62%), Positives = 71/86 (82%), Gaps = 1/86 (1%)
 Frame = +2

Query: 2   FTVGIDIDTRAYFTSATIIIAVPTGIKIFR*LATIHGTQINYNP-NIL*RLGFVFLFTVG 178
           FTVG+D+DTRAYF++AT++IA+PTGIKIF  LAT+ G  I ++   +L  +GF+ LFT+G
Sbjct: 299 FTVGLDVDTRAYFSAATMVIAIPTGIKIFSWLATLTGGAIQWSRVPMLYAIGFLILFTIG 358

Query: 179 GLTGVILANSSIDITLHDTYYVVAHF 256
           GLTGVIL+NS +DI  HDTY+VVAHF
Sbjct: 359 GLTGVILSNSVLDIAFHDTYFVVAHF 384



 Score = 27.5 bits (58), Expect = 0.67
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = +1

Query: 253 FHYVLSIGAVFAIIG 297
           FHYVLS+GA+F + G
Sbjct: 384 FHYVLSMGALFGLCG 398


>SPAC343.11c |msc1||multi-copy suppressor of Chk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1588

 Score = 25.0 bits (52), Expect = 3.5
 Identities = 8/22 (36%), Positives = 17/22 (77%)
 Frame = +2

Query: 182 LTGVILANSSIDITLHDTYYVV 247
           L  ++LAN+++D T+H  Y+++
Sbjct: 657 LDHILLANATLDKTVHSAYWLM 678


>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
            Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 24.6 bits (51), Expect = 4.7
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +2

Query: 113  TQINYNPNIL*RLGFVFLFTVGGLTGVILANSSIDITL 226
            TQ+ YNP     LG   LF  G L+  +++ SS+ IT+
Sbjct: 932  TQLGYNPKPYFYLGIYTLF--GLLSCALISLSSLTITV 967


>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
           Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1227

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +2

Query: 185 TGVILANSSIDITLHDTYYVVAHFIMFYQ 271
           TG +++N+ +D+     Y VVA  + FY+
Sbjct: 496 TGNLVSNTGLDLQQATGYTVVAEKLNFYR 524


>SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 459

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +2

Query: 209 SIDITLHDTYYVVAHFIMFYQ*EQYLQ 289
           SID+ + + Y V AH I+    EQ+++
Sbjct: 80  SIDVVIKEAYVVRAHRILSIFQEQFIE 106


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,033,096
Number of Sequences: 5004
Number of extensions: 14882
Number of successful extensions: 28
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 110009772
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)