Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1071
         (359 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10)                  122   1e-28
SB_19226| Best HMM Match : I-set (HMM E-Value=0)                       27   6.1  
SB_15415| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.1  
SB_22798| Best HMM Match : Cadherin (HMM E-Value=0)                    26   8.0  

>SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10)
          Length = 229

 Score =  122 bits (293), Expect = 1e-28
 Identities = 55/81 (67%), Positives = 70/81 (86%)
 Frame = +2

Query: 14  IDIDTRAYFTSATIIIAVPTGIKIFR*LATIHGTQINYNPNIL*RLGFVFLFTVGGLTGV 193
           +++DTRAYFT+AT+IIAVPTGIK+F  LAT++G  I  +  +L  +GFVFLFT+GGLTGV
Sbjct: 1   MNVDTRAYFTAATMIIAVPTGIKVFSWLATLYGGAIRLDTPMLWAIGFVFLFTIGGLTGV 60

Query: 194 ILANSSIDITLHDTYYVVAHF 256
           ILANSS+D+ +HDTYYVVAHF
Sbjct: 61  ILANSSLDVVMHDTYYVVAHF 81



 Score = 31.5 bits (68), Expect = 0.21
 Identities = 13/16 (81%), Positives = 14/16 (87%)
 Frame = +1

Query: 253 FHYVLSIGAVFAIIGG 300
           FHYVLS+GAVFAI  G
Sbjct: 81  FHYVLSMGAVFAIFAG 96


>SB_19226| Best HMM Match : I-set (HMM E-Value=0)
          Length = 1500

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = -3

Query: 114  VPCIVASHLKILIPVGTAIIIVAEVKYARVSISIPTV 4
            V  +V S + +++PV   +++V  V  + V +S+P V
Sbjct: 1374 VVVVVVSVVVVVVPVVVVVVVVVVVVVSIVVVSVPAV 1410


>SB_15415| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1390

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = -3

Query: 114 VPCIVASHLKILIPVGTAIIIVAEVKYARVSISIPTV 4
           V  +V S + +++PV   +++V  V  + V +S+P V
Sbjct: 389 VVVVVVSVVVVVVPVVVVVVVVVVVVVSIVVVSVPAV 425


>SB_22798| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 3255

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 5/77 (6%)
 Frame = +2

Query: 23  DTRAYFTSATIIIAVPTGIKIFR*LATIHGTQINYNPNIL*RLGFV-----FLFTVGGLT 187
           D R  F+SA    +V   + I   + T+  +  +   N   R  F        FT+  +T
Sbjct: 507 DNRPVFSSAQYTASVDEDVAIGAAMVTVTASDKDNGNNADLRYSFTSGNTNHAFTLDAVT 566

Query: 188 GVILANSSIDITLHDTY 238
           GV+  + S+D     +Y
Sbjct: 567 GVVTVSRSLDFEQRSSY 583


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,962,364
Number of Sequences: 59808
Number of extensions: 91061
Number of successful extensions: 144
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 572951758
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)