Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1071
         (359 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g18480.1 68418.m02179 glycogenin glucosyltransferase (glycoge...    27   3.8  

>At5g18480.1 68418.m02179 glycogenin glucosyltransferase
           (glycogenin)-related low similarity to glycogenin-1 from
           Mus musculus [SP|Q9R062], Rattus norvegicus [SP|O08730],
           Homo sapiens [SP|P46976]; contains Pfam profile PF01501:
           Glycosyl transferase family 8
          Length = 537

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 13/59 (22%), Positives = 27/59 (45%)
 Frame = +1

Query: 166 IHSRRINRCNFSQFFXXXXXXXXLLCSSSFHYVLSIGAVFAIIGGLLTDILYLQAFIKF 342
           +H R    C+ +  +         + + S  Y+L I A+F  +G ++   + L AF+ +
Sbjct: 449 VHQRAGGSCDVTTLYYGLGMAFLAIAAVSLPYILGITALFTRLGLMVGLAIILAAFMTY 507


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,982,819
Number of Sequences: 28952
Number of extensions: 67454
Number of successful extensions: 109
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 469342752
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)