Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS1067
(369 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g34555.1 68417.m04910 40S ribosomal protein S25, putative 67 4e-12
At2g16360.1 68415.m01872 40S ribosomal protein S25 (RPS25A) 67 4e-12
At4g39200.1 68417.m05550 40S ribosomal protein S25 (RPS25E) ribo... 66 9e-12
At2g21580.1 68415.m02567 40S ribosomal protein S25 (RPS25B) 65 1e-11
At5g64950.1 68418.m08170 mitochondrial transcription termination... 29 0.97
At1g14500.1 68414.m01719 ankyrin repeat family protein contains ... 29 1.3
At3g19960.1 68416.m02526 myosin (ATM) nearly identical to myosin... 27 5.2
At2g23170.1 68415.m02768 auxin-responsive GH3 family protein sim... 27 5.2
At2g17250.1 68415.m01992 expressed protein weak similarity to Ri... 27 5.2
At1g24706.1 68414.m03104 expressed protein 27 5.2
At5g55500.1 68418.m06912 beta-(1,2)-xylosyltransferase (XYLT) id... 26 6.8
At4g02110.1 68417.m00282 BRCT domain-containing protein contains... 26 6.8
At1g48180.1 68414.m05378 expressed protein ; expression supporte... 26 6.8
At5g38830.1 68418.m04697 tRNA synthetase class I (C) family prot... 26 9.0
At5g27640.1 68418.m03311 eukaryotic translation initiation facto... 26 9.0
At4g36670.1 68417.m05203 mannitol transporter, putative similar ... 26 9.0
At4g27630.1 68417.m03971 expressed protein 26 9.0
At2g02810.1 68415.m00226 UDP-galactose/UDP-glucose transporter c... 26 9.0
>At4g34555.1 68417.m04910 40S ribosomal protein S25, putative
Length = 108
Score = 66.9 bits (156), Expect = 4e-12
Identities = 29/51 (56%), Positives = 41/51 (80%)
Frame = +2
Query: 116 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVSXRLKVRGSLARRALIDLGKK 268
+NN VLFD+ TY+KL E P++KLITP+++S RL++ GSLARRA+ +L K
Sbjct: 37 VNNMVLFDQATYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIRELMAK 87
Score = 30.7 bits (66), Expect = 0.32
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +1
Query: 241 KSTHRLREKGLIKQVVQHHGQVIYTRATKG 330
++ L KG I+ V H Q IYTRAT G
Sbjct: 79 RAIRELMAKGTIRMVSAHSSQQIYTRATHG 108
>At2g16360.1 68415.m01872 40S ribosomal protein S25 (RPS25A)
Length = 125
Score = 66.9 bits (156), Expect = 4e-12
Identities = 28/48 (58%), Positives = 40/48 (83%)
Frame = +2
Query: 116 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVSXRLKVRGSLARRALIDL 259
+NN VLFD+ TY+KL E P++KLITP+++S RL++ GSLAR+A+ DL
Sbjct: 53 VNNMVLFDQATYDKLMSEAPKFKLITPSILSDRLRINGSLARKAIRDL 100
>At4g39200.1 68417.m05550 40S ribosomal protein S25 (RPS25E)
ribosomal protein S25, Lycopersicon esculentum,
PIR2:S40089
Length = 108
Score = 65.7 bits (153), Expect = 9e-12
Identities = 28/51 (54%), Positives = 41/51 (80%)
Frame = +2
Query: 116 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVSXRLKVRGSLARRALIDLGKK 268
+NN VLFD+ TY+KL E P++KLITP+++S R+++ GSLARRA+ +L K
Sbjct: 37 VNNMVLFDQATYDKLLTEAPKFKLITPSILSDRMRINGSLARRAIRELMAK 87
Score = 30.3 bits (65), Expect = 0.42
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +1
Query: 241 KSTHRLREKGLIKQVVQHHGQVIYTRAT 324
++ L KG+I+ V H Q IYTRAT
Sbjct: 79 RAIRELMAKGVIRMVAAHSSQQIYTRAT 106
>At2g21580.1 68415.m02567 40S ribosomal protein S25 (RPS25B)
Length = 108
Score = 65.3 bits (152), Expect = 1e-11
Identities = 28/51 (54%), Positives = 41/51 (80%)
Frame = +2
Query: 116 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVSXRLKVRGSLARRALIDLGKK 268
+NN VLFD+ TY+KL E P++KLITP+++S R+++ GSLARRA+ +L K
Sbjct: 37 VNNMVLFDQGTYDKLLTEAPKFKLITPSILSDRMRINGSLARRAIRELMAK 87
Score = 30.7 bits (66), Expect = 0.32
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +1
Query: 241 KSTHRLREKGLIKQVVQHHGQVIYTRAT 324
++ L KGLI+ V H Q IYTRAT
Sbjct: 79 RAIRELMAKGLIRMVSAHSSQQIYTRAT 106
>At5g64950.1 68418.m08170 mitochondrial transcription termination
factor-related / mTERF-related contains Pfam profile
PF02536: mTERF
Length = 391
Score = 29.1 bits (62), Expect = 0.97
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = -1
Query: 351 SLCDWIIALGRTRVDHLPMVLDYLFDETFFPKSMSALLAREPRTFNLSD 205
S C W++ + LP + YL +++LL R+PR FNLS+
Sbjct: 166 SRCGWLLLSRDPNLFLLPNI-SYLETCGIVGSQLASLLRRQPRIFNLSE 213
>At1g14500.1 68414.m01719 ankyrin repeat family protein contains
Pfam domain, PF00023: Ankyrin repeat
Length = 436
Score = 28.7 bits (61), Expect = 1.3
Identities = 12/49 (24%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = -1
Query: 180 YCGTSLYSFSYVGLSN--NTWLFNLSRTFPLDHFFFLALPPPDPSFFFC 40
+C LY+F + + + TW F + + + + +A+ P+P F C
Sbjct: 342 FCCALLYTFCLLPIGSLFTTWFFWIGASLGVSYALAMAIISPNPLLFLC 390
>At3g19960.1 68416.m02526 myosin (ATM) nearly identical to myosin
[Arabidopsis thaliana] GI:6491702; similar to myosin
GI:6491702 from [Arabidopsis thaliana] ;contains Pfam
profiles: PF00063: myosin head (motor domain), PF00612:
IQ calmodulin-binding motif; identical to cDNA myosin
(ATM) GI:297068
Length = 1166
Score = 26.6 bits (56), Expect = 5.2
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +2
Query: 176 QYKLITPAVVSXRLKVRGSLARRALIDLGKKVSSNR*SNTMG 301
QYK I A V + +RG L RR D+G S +N +G
Sbjct: 907 QYKGIADASVVIQSAIRGWLVRRCSGDIGWLKSGGAKTNELG 948
>At2g23170.1 68415.m02768 auxin-responsive GH3 family protein
similar to auxin-responsive GH3 product [Glycine max]
GI:18591; contains Pfam profile PF03321: GH3
auxin-responsive promoter
Length = 595
Score = 26.6 bits (56), Expect = 5.2
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -3
Query: 154 LICGFIKQHLVVQLVTNFSFGPLLLLGFAAT 62
++CG + +H V++L F+ G L +GF T
Sbjct: 213 MLCGLLMRHEVLRLGAVFASGLLRAIGFLQT 243
>At2g17250.1 68415.m01992 expressed protein weak similarity to
Ribosome biogenesis protein MAK21 (Swiss-Prot:Q12176)
[Saccharomyces cerevisiae]
Length = 577
Score = 26.6 bits (56), Expect = 5.2
Identities = 11/36 (30%), Positives = 23/36 (63%)
Frame = +2
Query: 119 NNQVLFDKPTYEKLYKEVPQYKLITPAVVSXRLKVR 226
+++ + +KPT +K E L++PA +S R+K++
Sbjct: 245 SDESISEKPTDKKKKTEKGDSTLLSPATISKRMKLK 280
>At1g24706.1 68414.m03104 expressed protein
Length = 1781
Score = 26.6 bits (56), Expect = 5.2
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -1
Query: 117 NLSRTFPLDHFFFLALPPPDP 55
+L ++ P DHF LPPP P
Sbjct: 1562 SLEKSHPDDHFHSQGLPPPPP 1582
>At5g55500.1 68418.m06912 beta-(1,2)-xylosyltransferase (XYLT)
identical to SP|Q9LDH0
Length = 534
Score = 26.2 bits (55), Expect = 6.8
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -1
Query: 369 FXNLYHSLCDWIIALGRTRVDHLP 298
+ NL+H++ DW A +RV LP
Sbjct: 246 YANLFHTVTDWYSAYVSSRVTGLP 269
>At4g02110.1 68417.m00282 BRCT domain-containing protein contains Pfam
domain, PF00533: BRCA1 C Terminus (BRCT) domain
Length = 1293
Score = 26.2 bits (55), Expect = 6.8
Identities = 16/57 (28%), Positives = 22/57 (38%), Gaps = 4/57 (7%)
Frame = -2
Query: 224 GPLTXQIRQQV*LACTVGLPCTVSHMWVYQTT----PGCSTCHELFLWTTSSSWLCR 66
GP + + Q + G C SH W YQ T P + F S SW+ +
Sbjct: 1068 GPRSQRNEYQQIIRRLKGKCCRDSHQWSYQATHFIAPEIRRTEKFFAAAASGSWILK 1124
>At1g48180.1 68414.m05378 expressed protein ; expression supported
by MPSS
Length = 239
Score = 26.2 bits (55), Expect = 6.8
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -1
Query: 213 LSDTTAGVISLYCGTSLYSFSYVGL 139
L + + +YCGTS SYVGL
Sbjct: 149 LQQDASAITGIYCGTSGEPASYVGL 173
>At5g38830.1 68418.m04697 tRNA synthetase class I (C) family protein
similar to SP|Q06752 Cysteinyl-tRNA synthetase (EC
6.1.1.16) (Cysteine--tRNA ligase) (CysRS) {Bacillus
subtilis}; contains Pfam profile PF01406: tRNA
synthetases class I (C)
Length = 511
Score = 25.8 bits (54), Expect = 9.0
Identities = 11/21 (52%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Frame = -1
Query: 201 TAGVISLY-CGTSLYSFSYVG 142
T G I LY CG + Y FS++G
Sbjct: 25 TPGKIGLYVCGITAYDFSHIG 45
>At5g27640.1 68418.m03311 eukaryotic translation initiation factor 3
subunit 9 / eIF-3 eta / eIF3b (TIF3B1) nearly identical
to SP|Q9C5Z1 Eukaryotic translation initiation factor 3
subunit 9 (eIF-3 eta) (eIF3 p110) (eIF3b) {Arabidopsis
thaliana}
Length = 712
Score = 25.8 bits (54), Expect = 9.0
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Frame = -1
Query: 180 YCGTSLYSFSYVGLSNNTWLFNLSRTFPL--DHFFFLALPPPDPSF 49
Y T++ S + W FN + + DHFF LA P PSF
Sbjct: 566 YVATAVTSVHEMENGFTIWSFNGIMLYRILKDHFFQLAWRPRPPSF 611
>At4g36670.1 68417.m05203 mannitol transporter, putative similar to
mannitol transporter [Apium graveolens var. dulce]
GI:12004316; contains Pfam profile PF00083: major
facilitator superfamily protein
Length = 493
Score = 25.8 bits (54), Expect = 9.0
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -1
Query: 192 VISLYCGTSLYSFSYVGLSNNTWLFNLSRTFPL 94
V+S+ S +F +GL TW+++ S FPL
Sbjct: 377 VLSIVAAYSFVAFFSIGLGPITWVYS-SEVFPL 408
>At4g27630.1 68417.m03971 expressed protein
Length = 348
Score = 25.8 bits (54), Expect = 9.0
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = -2
Query: 308 ITCPWCWTTCLMRPFSL 258
I P CWTT L PF L
Sbjct: 4 ILSPTCWTTLLKHPFIL 20
>At2g02810.1 68415.m00226 UDP-galactose/UDP-glucose transporter
contains transmembrane domains; identical to
UDP-galactose/UDP-glucose transporter (GI:22651763)
[Arabidopsis thaliana] similar to UGTrel1 (GI:1669564)
[Rattus rattus]; identical to cDNA
UDP-galactose/UDP-glucose transporter GI:22651762
Length = 332
Score = 25.8 bits (54), Expect = 9.0
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = -3
Query: 175 WDFLVQFLICGFIKQHLVVQLVTNF 101
WD L ++ ICG + Q+ + ++NF
Sbjct: 245 WDIL-KYCICGAVGQNFIFMTISNF 268
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,331,888
Number of Sequences: 28952
Number of extensions: 168699
Number of successful extensions: 549
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 549
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 487896136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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