Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1065
         (548 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    25   9.7  
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch...    25   9.7  
SPAC222.11 |hem13||coproporphyrinogen III oxidase |Schizosacchar...    25   9.7  

>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +2

Query: 227  RWLPKXFIATHKLVLSVCSPYFQEMFQMNPTQH 325
            +++ K FI T    LS    + + +FQ++PT H
Sbjct: 982  KFIEKVFIETKFSSLSGRQTFLKFIFQLSPTSH 1014


>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1133

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 259 MCCNKPLRQPTLRLRDLHATAG 194
           +CCN+P++ P L L   HA  G
Sbjct: 879 ICCNEPIQNPLL-LNCKHACCG 899


>SPAC222.11 |hem13||coproporphyrinogen III oxidase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 312

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 12/47 (25%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +2

Query: 227 RWLPKXFIATH-KLVLSVCSPYFQEMFQMNPTQHPIVFLKDVSHSAL 364
           +W  + F+  H K    +   +F ++ + +P Q    F+KD +H+ L
Sbjct: 177 KWADEYFLIKHRKETRGIGGIFFDDLSEKDP-QELFAFVKDCAHTFL 222


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,290,795
Number of Sequences: 5004
Number of extensions: 44517
Number of successful extensions: 91
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)