Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS1065
(548 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0604 - 16132173-16132391,16132488-16132556,16132824-161328... 42 2e-04
07_01_1036 + 9021395-9021658,9024214-9024690 35 0.037
06_01_1008 - 7853089-7854147 33 0.15
08_02_1251 - 25592537-25593380,25593589-25593893 33 0.20
08_01_0803 - 7771507-7772184,7772238-7772325,7772440-7772546 32 0.26
08_01_0797 + 7711772-7712869 31 0.61
08_01_0801 - 7750548-7751708 30 1.1
08_02_1304 - 26008105-26009070 30 1.4
08_01_0027 - 195321-195932,197206-197415 29 1.8
08_02_1310 - 26037025-26038074 29 3.2
05_07_0212 + 28434612-28435931,28436012-28436044,28436557-284366... 28 5.6
04_04_0804 + 28171110-28171176,28171829-28172317,28172384-28173072 28 5.6
10_08_0059 + 14529885-14530991 27 7.5
08_01_0199 + 1628158-1629192 27 9.9
03_02_0568 + 9514715-9514944,9515174-9515300,9515529-9515684,951... 27 9.9
01_07_0176 - 41733845-41734834,41736058-41736588 27 9.9
>05_03_0604 -
16132173-16132391,16132488-16132556,16132824-16132898,
16132981-16133113,16133188-16133297,16133360-16133407,
16133657-16133983,16135006-16135233,16135360-16135689,
16135780-16136586
Length = 781
Score = 42.3 bits (95), Expect = 2e-04
Identities = 26/63 (41%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Frame = +2
Query: 257 HKLVLSVCSPYFQEMFQ--MNPTQHPIVFLKDVSHSALRDLLQFMYQGEVNVKPED*HHL 430
HKL+LS+ S F +MF M + VF +DV A L+QFMY GE+ V E+ +
Sbjct: 366 HKLILSLWSMTFDKMFTNGMKESSASNVFFEDVPVEAFFLLIQFMYSGELKVDIEEITPV 425
Query: 431 LVQ 439
LV+
Sbjct: 426 LVE 428
>07_01_1036 + 9021395-9021658,9024214-9024690
Length = 246
Score = 35.1 bits (77), Expect = 0.037
Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Frame = +2
Query: 248 IATHKLVLSVCSPYFQEMFQ--MNPTQHPIVFLKDVSHSALRDLLQFMYQGEVNVKPED* 421
+ H+++L+ SP F+ M + M ++ I+ + DVS+ LR + +MY E + +
Sbjct: 81 VPAHRVILASRSPVFRAMLENEMEESRSGIIKIYDVSYDVLRAFVHYMYTAEALLDEQMA 140
Query: 422 HHLLV 436
LLV
Sbjct: 141 SDLLV 145
>06_01_1008 - 7853089-7854147
Length = 352
Score = 33.1 bits (72), Expect = 0.15
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Frame = +2
Query: 245 FIATHKLVLSVCSPYFQEMF--QMNPTQHPIVFLKDVSHSALRDLLQFMYQG 394
F+A HK++L+ SP F F M + V +KD+ S + +L F+Y G
Sbjct: 188 FLA-HKIILAARSPVFMAEFFGPMKESSSQCVEIKDIEASVFKAMLHFIYTG 238
>08_02_1251 - 25592537-25593380,25593589-25593893
Length = 382
Score = 32.7 bits (71), Expect = 0.20
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = +2
Query: 257 HKLVLSVCSPYFQEMFQMNPTQHPI--VFLKDVSHSALRDLLQFMYQGE 397
H+ +L+VCSP F+ + + + + L D+ + LL FMY G+
Sbjct: 238 HRALLAVCSPVFKALLLSSTAEAAACSITLNDIKPAMFEALLHFMYTGD 286
>08_01_0803 - 7771507-7772184,7772238-7772325,7772440-7772546
Length = 290
Score = 32.3 bits (70), Expect = 0.26
Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Frame = +2
Query: 251 ATHKLVLSVCSPYFQ-EMF-QMNPTQHPIVFLKDVSHSALRDLLQFMYQGEVNV 406
A HK+VL++ SP F+ E+F M ++ +KD+ + LL F+Y +++
Sbjct: 131 AAHKVVLAMRSPVFKAELFGPMREAGAQVLPIKDIQPDVFKALLHFIYTDSLSI 184
>08_01_0797 + 7711772-7712869
Length = 365
Score = 31.1 bits (67), Expect = 0.61
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +2
Query: 251 ATHKLVLSVCSPYFQEMF--QMNPTQHPIVFLKDVSHSALRDLLQFMY 388
A HKLVL+ SP F+ F +M + +KD+ S R LL F+Y
Sbjct: 204 AAHKLVLAARSPVFKAEFYGEMIERGTFSIDIKDMQPSVFRALLHFIY 251
>08_01_0801 - 7750548-7751708
Length = 386
Score = 30.3 bits (65), Expect = 1.1
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Frame = +2
Query: 251 ATHKLVLSVCSPYFQ-EMFQM--NPTQHPIVFLKDVSHSALRDLLQFMYQGEVNV 406
+ HKLVL++ SP F+ E+ + P PI + D+ + R LLQF+Y + V
Sbjct: 213 SVHKLVLAMRSPVFKAELCGLLREPGTQPITIV-DMQPAVFRALLQFIYTDQFPV 266
>08_02_1304 - 26008105-26009070
Length = 321
Score = 29.9 bits (64), Expect = 1.4
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = +2
Query: 257 HKLVLSVCSPYFQE--MFQMNPTQHPIVFLKDVSHSALRDLLQFMYQGEVNVK 409
H+ VL+ SP F+ + M P V L+D+ + R LL F+Y + ++
Sbjct: 168 HRAVLAARSPVFRAELLGSMAEATMPCVTLRDIEPATFRALLHFVYTDVLQIE 220
>08_01_0027 - 195321-195932,197206-197415
Length = 273
Score = 29.5 bits (63), Expect = 1.8
Identities = 13/49 (26%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = +2
Query: 248 IATHKLVLSVCSPYFQEMF--QMNPTQHPIVFLKDVSHSALRDLLQFMY 388
+ HK +L+ CSP F+ MF + + + + D+ + L+ F+Y
Sbjct: 119 LKAHKAILASCSPVFESMFLHDLKEKESSTININDMCLESCSALIGFIY 167
>08_02_1310 - 26037025-26038074
Length = 349
Score = 28.7 bits (61), Expect = 3.2
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = +2
Query: 257 HKLVLSVCSPYFQEMF--QMNPTQHPIVFLKDVSHSALRDLLQFMY 388
H+ VL+ SP F+ M P V L+D+ +A R +L F+Y
Sbjct: 193 HRAVLAARSPVFKAALFGSMAEATAPSVALRDMDPAAFRAVLHFIY 238
>05_07_0212 +
28434612-28435931,28436012-28436044,28436557-28436670,
28436767-28437102,28437221-28437283,28437364-28437519,
28437650-28437715,28439074-28439310,28439403-28439678,
28440060-28440248,28440459-28440620
Length = 983
Score = 27.9 bits (59), Expect = 5.6
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +2
Query: 374 LQFMYQGEVNVKPED*HHLLVQRTTSSXRLTGIQ*EVHASNQALQQP 514
+QF +G V+VKP D LL++ R G V+A++ + +P
Sbjct: 61 VQFSSRGSVSVKPSDDSDLLLKPPQKPIRANGPPESVNAASPSPSRP 107
>04_04_0804 + 28171110-28171176,28171829-28172317,28172384-28173072
Length = 414
Score = 27.9 bits (59), Expect = 5.6
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +2
Query: 278 CSPYFQEMFQMNPTQHPIVFLKDVSHSALRDLLQFMYQGEVN 403
C P + F T++P+VFL+ + + DLLQ + V+
Sbjct: 253 CEPRKEIFFTERNTENPLVFLRFLVSTPWGDLLQIKFSRRVH 294
>10_08_0059 + 14529885-14530991
Length = 368
Score = 27.5 bits (58), Expect = 7.5
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Frame = +2
Query: 248 IATHKLVLSVCSPYFQ-EMFQMNPTQH---PIVFLKDVSHSALRDLLQFMY 388
+A H++VL+ SP F+ E+ P + ++ + D+ R LL +MY
Sbjct: 212 VAAHRVVLAARSPVFKAELLAGVPAKDGGGAVIQIDDMDAEVFRSLLHYMY 262
>08_01_0199 + 1628158-1629192
Length = 344
Score = 27.1 bits (57), Expect = 9.9
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = +2
Query: 251 ATHKLVLSVCSPYFQEMFQMNPTQH--PIVFLKDVSHSALRDLLQFMY 388
A H++VL++ SP F + +H P + + D+ LL+F+Y
Sbjct: 211 AAHRIVLAMRSPVFMASLYGSMREHRAPRIAVDDMEPEVFDALLRFVY 258
>03_02_0568 + 9514715-9514944,9515174-9515300,9515529-9515684,
9515765-9516102,9516191-9516329,9517083-9517152,
9517201-9517307,9517387-9517437,9517549-9517660,
9517783-9517869,9517958-9518133,9518479-9518586,
9518654-9518812,9518888-9518971,9519053-9519258,
9519565-9519666,9519768-9519877,9519963-9520114,
9520380-9520548,9520841-9520878,9521963-9522571,
9523314-9523784,9523786-9523871,9524396-9524906,
9525388-9525412,9526001-9526051,9526228-9526301,
9526412-9526534,9526667-9526738,9526924-9527020,
9527174-9527283
Length = 1649
Score = 27.1 bits (57), Expect = 9.9
Identities = 17/59 (28%), Positives = 30/59 (50%)
Frame = +2
Query: 296 EMFQMNPTQHPIVFLKDVSHSALRDLLQFMYQGEVNVKPED*HHLLVQRTTSSXRLTGI 472
+MF ++P++ P F + S S +RD Q+ + N++ D R + RLTG+
Sbjct: 1073 DMFLVDPSESPQDFAANTSSSGVRDDRQWCVLEQANLQGYDSDQ---PRRRQARRLTGL 1128
>01_07_0176 - 41733845-41734834,41736058-41736588
Length = 506
Score = 27.1 bits (57), Expect = 9.9
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +2
Query: 317 TQHPIVFLKDVSHSALRDLLQFMYQGEVNVKPE 415
T ++ + VS+ LLQF+Y G+V++ P+
Sbjct: 100 TPGAVIPVSSVSYEVFLLLLQFLYSGQVSLVPQ 132
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,531,123
Number of Sequences: 37544
Number of extensions: 274521
Number of successful extensions: 656
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 654
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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