Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS1063
(399 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2D10.11c |||nucleosome assembly protein Nap2 |Schizosaccharo... 39 2e-04
SPCC364.06 |nap1||nucleosome assembly protein Nap1 |Schizosaccha... 39 2e-04
SPBC28F2.09 |||transcription factor TFIIA complex large subunit ... 28 0.61
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce... 26 2.5
SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|c... 26 2.5
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb... 24 7.6
SPCC1442.16c |zta1|SPCC285.01c|NADPH quinone oxidoreductase/ARE-... 24 7.6
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr... 24 7.6
SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces pomb... 24 7.6
SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces pom... 24 10.0
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi... 24 10.0
>SPBC2D10.11c |||nucleosome assembly protein Nap2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 379
Score = 39.1 bits (87), Expect = 2e-04
Identities = 17/37 (45%), Positives = 24/37 (64%)
Frame = +2
Query: 281 FYSEVHALECXYEKLYKPLYEKRALIVDGTYEPNDDE 391
F ++ LE YEK Y+P++ +RA I+ G EP DDE
Sbjct: 112 FRQKMLDLETKYEKKYQPIFSRRAEIIKGVSEPVDDE 148
>SPCC364.06 |nap1||nucleosome assembly protein Nap1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 393
Score = 39.1 bits (87), Expect = 2e-04
Identities = 16/51 (31%), Positives = 29/51 (56%)
Frame = +2
Query: 239 LENSSEEFVDIXAXFYSEVHALECXYEKLYKPLYEKRALIVDGTYEPNDDE 391
L + + D+ + F E+ LE Y K Y P++++R+ +V G EP ++E
Sbjct: 82 LRGLQKRYSDLESQFQKELFELEKAYAKKYAPIFKRRSEVVRGADEPTEEE 132
>SPBC28F2.09 |||transcription factor TFIIA complex large subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 369
Score = 27.9 bits (59), Expect = 0.61
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +2
Query: 320 KLYKPLYEKRALIVDGTYEPNDDE 391
++Y+ L + R L +DGT E N+DE
Sbjct: 265 EIYEVLKKNRILQIDGTIEDNEDE 288
>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2100
Score = 25.8 bits (54), Expect = 2.5
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 126 HLLKSGVTRNEMIAAITNRLHAEAMASLP 212
HLL++ T +E AA +LH + + S P
Sbjct: 1596 HLLRNSATNDETKAAFVYQLHKQGILSEP 1624
>SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 801
Score = 25.8 bits (54), Expect = 2.5
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +2
Query: 290 EVHALECXYEKLYKPLYEKRAL 355
E+ AL+C YE+ Y+ +EK L
Sbjct: 133 EMVALQCMYERKYRQSHEKATL 154
>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1207
Score = 24.2 bits (50), Expect = 7.6
Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
Frame = +1
Query: 13 VRVKY*IWVPSNVLV--TTTHPKWSL 84
+R+K +WV +NVL+ T H K++L
Sbjct: 535 IRIKSAVWVENNVLLYATLDHLKYAL 560
>SPCC1442.16c |zta1|SPCC285.01c|NADPH quinone
oxidoreductase/ARE-binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 329
Score = 24.2 bits (50), Expect = 7.6
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = -2
Query: 191 CMKAICDGRYHFITGHATFQ 132
C+K + + +ITGHA F+
Sbjct: 255 CLKFVRPSLFGYITGHAVFE 274
>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 583
Score = 24.2 bits (50), Expect = 7.6
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = +2
Query: 167 GHHKSPSCRS 196
GHHK+P CR+
Sbjct: 485 GHHKNPKCRA 494
>SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 24.2 bits (50), Expect = 7.6
Identities = 21/66 (31%), Positives = 30/66 (45%)
Frame = +2
Query: 161 DSGHHKSPSCRSDGIPTPECSSANPRLENSSEEFVDIXAXFYSEVHALECXYEKLYKPLY 340
+ G + S S RS TPE S + + EEF +I A YS + E LY+ Y
Sbjct: 66 EEGEYSSESGRS----TPELSPDDFEDADDEEEFEEIDAG-YSSDSSTEDVAPGLYESPY 120
Query: 341 EKRALI 358
++ I
Sbjct: 121 DENLYI 126
>SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 329
Score = 23.8 bits (49), Expect = 10.0
Identities = 11/29 (37%), Positives = 13/29 (44%)
Frame = +2
Query: 305 ECXYEKLYKPLYEKRALIVDGTYEPNDDE 391
EC E Y +E R I D Y P +E
Sbjct: 107 ECGSENDYNHNFEGRFCICDTVYNPETEE 135
>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
Usp107|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 23.8 bits (49), Expect = 10.0
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +2
Query: 314 YEKLYKPLYEKRALIVDGTYE 376
Y LYK LY + A +VD E
Sbjct: 41 YRSLYKKLYGQGAFLVDNPVE 61
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,497,181
Number of Sequences: 5004
Number of extensions: 25592
Number of successful extensions: 70
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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