Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1063
         (399 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0234 - 26602660-26602728,26602814-26602988,26603077-266031...    43   8e-05
06_01_0356 + 2557127-2557193,2557272-2557315,2557433-2557528,255...    41   4e-04
01_06_0465 - 29573972-29574110,29574300-29574343,29574434-295746...    41   4e-04
06_03_0740 - 24006485-24006629,24006821-24006864,24006954-240071...    33   0.083
12_01_0109 + 853043-853426,853653-853787,853866-854138                 28   2.4  
04_04_0699 - 27345243-27346199                                         27   4.1  
08_01_0695 + 6148873-6150051                                           27   7.2  
01_01_0712 - 5509748-5509990,5510099-5510554,5510959-5511951           27   7.2  

>05_06_0234 -
           26602660-26602728,26602814-26602988,26603077-26603120,
           26603204-26603381,26603468-26603652,26603737-26603801,
           26603985-26604066,26604342-26604434,26605096-26605191,
           26605312-26605355,26605467-26605530
          Length = 364

 Score = 43.2 bits (97), Expect = 8e-05
 Identities = 19/37 (51%), Positives = 25/37 (67%)
 Frame = +2

Query: 266 DIXAXFYSEVHALECXYEKLYKPLYEKRALIVDGTYE 376
           D+ A F+ E  ALE  Y+K+Y+PLY KR  IV+G  E
Sbjct: 73  DLEAKFFEERAALEAKYQKMYEPLYSKRYEIVNGVVE 109


>06_01_0356 +
           2557127-2557193,2557272-2557315,2557433-2557528,
           2559259-2559351,2559450-2559540,2559617-2559678,
           2559754-2559938,2560022-2560199,2560293-2560336,
           2560440-2560635,2560728-2560745,2560955-2561005
          Length = 374

 Score = 40.7 bits (91), Expect = 4e-04
 Identities = 19/37 (51%), Positives = 24/37 (64%)
 Frame = +2

Query: 266 DIXAXFYSEVHALECXYEKLYKPLYEKRALIVDGTYE 376
           +I   F+ E  ALE  Y+KLY+PLY KR  IV+G  E
Sbjct: 74  EIELKFFEERAALEAKYQKLYEPLYTKRYNIVNGVVE 110


>01_06_0465 -
           29573972-29574110,29574300-29574343,29574434-29574602,
           29574707-29574894,29575081-29575145,29575257-29575311,
           29575502-29575594,29576035-29576130,29576259-29576302,
           29576419-29576431
          Length = 301

 Score = 40.7 bits (91), Expect = 4e-04
 Identities = 19/37 (51%), Positives = 23/37 (62%)
 Frame = +2

Query: 266 DIXAXFYSEVHALECXYEKLYKPLYEKRALIVDGTYE 376
           ++ A F  E  ALE  Y+KLY PLY KR+ IV G  E
Sbjct: 56  ELEAKFLEEKAALEANYQKLYGPLYSKRSEIVSGVLE 92


>06_03_0740 -
           24006485-24006629,24006821-24006864,24006954-24007122,
           24007226-24007413,24007572-24007634,24007992-24008084,
           24009837-24009932,24010024-24010067,24010184-24010357,
           24010764-24010974
          Length = 408

 Score = 33.1 bits (72), Expect = 0.083
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +2

Query: 266 DIXAXFYSEVHALECXYEKLYKPLYEKRALIVD 364
           ++   F+ E  ALE  Y+KLY PLY K   + D
Sbjct: 180 ELEVKFFEEKAALEAKYQKLYGPLYSKEKGVPD 212


>12_01_0109 + 853043-853426,853653-853787,853866-854138
          Length = 263

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = -1

Query: 207 GMPSLLHEGDL*WPLSFHYGSRHFSTGVALVHHFXXXXXXLQTP 76
           G+P L   GD+ + L+F  G+ H  T VAL   F       Q+P
Sbjct: 129 GVPDLSEHGDV-YDLTFGLGADHPPTAVALRKEFQRIILYQQSP 171


>04_04_0699 - 27345243-27346199
          Length = 318

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 17/56 (30%), Positives = 28/56 (50%)
 Frame = -1

Query: 318 SYXHSSACTSL*NXAXMSTNSSEEFSRRGFADEHSGVGMPSLLHEGDL*WPLSFHY 151
           S+  SS+CT+    +  S++ S +  +RG A   S + MP +     L WP+   Y
Sbjct: 244 SFSSSSSCTTTTTSSSTSSSGSPKRRKRGEAAAAS-MSMPLVPPPSQLNWPVQAWY 298


>08_01_0695 + 6148873-6150051
          Length = 392

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 11/21 (52%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
 Frame = +2

Query: 182 PSCRSDGIPTPECSSA-NPRL 241
           PSCR+ G  +P C++A +PRL
Sbjct: 65  PSCRAAGFCSPSCAAASHPRL 85


>01_01_0712 - 5509748-5509990,5510099-5510554,5510959-5511951
          Length = 563

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +2

Query: 314 YEKLYKPLYEKRALIVDGTYEPNDDE 391
           Y +LYK LY+ + + +    +P+DD+
Sbjct: 277 YSRLYKGLYDDKPVAIKFIRQPDDDD 302


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,877,085
Number of Sequences: 37544
Number of extensions: 171096
Number of successful extensions: 354
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 349
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 354
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)