Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1063
         (399 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g19480.1 68415.m02277 nucleosome assembly protein (NAP), puta...    44   5e-05
At4g26110.1 68417.m03759 nucleosome assembly protein (NAP), puta...    40   8e-04
At5g56950.1 68418.m07109 nucleosome assembly protein (NAP), puta...    39   0.001
At3g13782.1 68416.m01740 nucleosome assembly protein (NAP) famil...    38   0.003
At5g58950.1 68418.m07384 protein kinase family protein concontai...    27   3.5  
At4g15180.1 68417.m02328 SET domain-containing protein contains ...    27   6.1  
At2g17620.1 68415.m02038 cyclin, putative (CYC2a) similar to cyc...    27   6.1  
At1g63420.1 68414.m07172 expressed protein                             27   6.1  

>At2g19480.1 68415.m02277 nucleosome assembly protein (NAP),
           putative similar to nucleosome assembly protein 1
           [Glycine max] GI:1161252; contains Pfam profile PF00956:
           Nucleosome assembly protein (NAP)
          Length = 379

 Score = 43.6 bits (98), Expect = 5e-05
 Identities = 22/56 (39%), Positives = 30/56 (53%)
 Frame = +2

Query: 209 TPECSSANPRLENSSEEFVDIXAXFYSEVHALECXYEKLYKPLYEKRALIVDGTYE 376
           TP        L     ++ ++ A F+ E  ALE  Y+KLY+PLY KR  IV+G  E
Sbjct: 48  TPPVRKRVEFLREIQNQYDEMEAKFFEERAALEAKYQKLYQPLYTKRYEIVNGVVE 103


>At4g26110.1 68417.m03759 nucleosome assembly protein (NAP),
           putative similar to nucleosome assembly protein 1
           [Glycine max] GI:1161252; contains Pfam profile PF00956:
           Nucleosome assembly protein (NAP)
          Length = 372

 Score = 39.5 bits (88), Expect = 8e-04
 Identities = 24/64 (37%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
 Frame = +2

Query: 209 TPECSSANPRLENSSEEFVDIXAXFYSEVHALECXYEKLYKPLYEKRALIVDGTYE---- 376
           TP        L +   +  ++ A F  E   LE  Y+ LY+PLY KR  IV+GT E    
Sbjct: 48  TPNVRKRVDALRDIQSQHDELEAKFREERAILEAKYQTLYQPLYVKRYEIVNGTTEVELA 107

Query: 377 PNDD 388
           P DD
Sbjct: 108 PEDD 111


>At5g56950.1 68418.m07109 nucleosome assembly protein (NAP),
           putative similar to nucleosome assembly protein 1
           [Glycine max] GI:1161252; contains Pfam profile PF00956:
           Nucleosome assembly protein (NAP)
          Length = 374

 Score = 39.1 bits (87), Expect = 0.001
 Identities = 19/37 (51%), Positives = 23/37 (62%)
 Frame = +2

Query: 266 DIXAXFYSEVHALECXYEKLYKPLYEKRALIVDGTYE 376
           +I   F  E  ALE  Y+KLY+PLY KR  IV+G  E
Sbjct: 67  EIETKFREERAALEAKYQKLYQPLYNKRYEIVNGATE 103


>At3g13782.1 68416.m01740 nucleosome assembly protein (NAP) family
           protein similar to nucleosome assembly protein 1
           [Glycine max] GI:1161252; contains Pfam profile PF00956:
           Nucleosome assembly protein (NAP)
          Length = 329

 Score = 37.5 bits (83), Expect = 0.003
 Identities = 17/37 (45%), Positives = 23/37 (62%)
 Frame = +2

Query: 266 DIXAXFYSEVHALECXYEKLYKPLYEKRALIVDGTYE 376
           ++   F +E  ALE  Y+ LYKPL+ KR  IV+G  E
Sbjct: 84  ELEEKFLAEKSALEATYDNLYKPLFAKRYEIVNGVVE 120


>At5g58950.1 68418.m07384 protein kinase family protein concontains
           protein kinase domain, Pfam:PF00069
          Length = 525

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +2

Query: 248 SSEEF-VDIXAXFYSEVHALECXYEKLYKPLYEKRALIVDGTYEPNDDE 391
           +SEEF VD+   F+    A    Y +LY   YE +A+ V     P+DD+
Sbjct: 196 ASEEFRVDMSKLFFGLKFA-HGLYSRLYHGKYEDKAVAVKLITVPDDDD 243


>At4g15180.1 68417.m02328 SET domain-containing protein contains Pfam
            profile PF00856: SET domain
          Length = 2326

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 191  CMKAICDGRYHFITGHATFQQVLR 120
            C   +C G Y  +TG   FQ+VL+
Sbjct: 1911 CGSQVCRGSYLNLTGEGAFQKVLK 1934


>At2g17620.1 68415.m02038 cyclin, putative (CYC2a) similar to cyclin
           2b protein [Arabidopsis thaliana] GI:509423; contains
           Pfam profiles PF00134: Cyclin, N-terminal domain,
           PF02984: Cyclin, C-terminal domain; identical to cDNA
           cyc2a mRNA for cyclin 2a protein GI:728518
          Length = 429

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +2

Query: 302 LECXYEKLYKPLYEKRALIVDGTYEPND 385
           L C YE++  P+ E   LI D  Y  ND
Sbjct: 256 LACKYEEVSVPVVEDLVLISDKAYTRND 283


>At1g63420.1 68414.m07172 expressed protein
          Length = 578

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 138 SGVTRNEMIAAITNRLHAEAMASLPP 215
           +GV +  MI ++ +R HA    SLPP
Sbjct: 520 NGVDKKFMIGSLVSRPHASGPCSLPP 545


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,864,519
Number of Sequences: 28952
Number of extensions: 135441
Number of successful extensions: 295
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 291
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 295
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 575830496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)