Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS1061
(359 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0334 + 2495275-2495433,2495553-2495661,2496311-2496378,249... 52 2e-07
09_06_0339 - 22400534-22400647,22401264-22401398,22401491-224015... 50 7e-07
08_02_1576 + 27965862-27965864,27965952-27966026,27966113-279662... 50 7e-07
03_05_0586 - 25875703-25876332,25876426-25876713,25877064-258771... 31 0.27
10_01_0146 - 1719997-1720386,1721498-1721515 29 0.83
06_03_1117 + 27750291-27750338,27751360-27751812,27751987-277521... 27 3.4
04_03_0916 + 20794240-20794246,20794585-20796545 27 3.4
10_08_1023 - 22341815-22342042,22342179-22342247,22342717-223428... 27 5.9
04_04_1699 + 35462160-35462555,35463114-35463196,35463317-354633... 27 5.9
03_05_0559 - 25610474-25610951,25611149-25611890,25612355-256127... 27 5.9
11_06_0621 + 25587476-25587604,25588230-25588423,25588800-255888... 26 7.7
05_01_0049 - 337132-337488,337613-337765,337924-338551,338617-33... 26 7.7
04_04_0176 - 23329589-23331043 26 7.7
02_05_0114 + 25958834-25961296 26 7.7
01_06_1117 - 34633311-34634030,34634434-34634873,34635320-346353... 26 7.7
>11_01_0334 + 2495275-2495433,2495553-2495661,2496311-2496378,
2496476-2496577,2496853-2497003,2497173-2497222,
2497432-2497557,2497761-2497863,2498104-2498204,
2498540-2498677,2498768-2498911,2499028-2499103,
2499224-2499309,2499432-2499560,2500572-2500674,
2500776-2500843,2500912-2501013,2501432-2501527,
2501723-2501848,2502152-2502254,2502427-2502569,
2503017-2503154,2503248-2503391,2503535-2503610,
2503883-2503968,2504135-2504212,2505180-2505254,
2505362-2505496,2506240-2506272,2507886-2507905,
2508570-2508666,2508899-2509000,2510612-2510725
Length = 1126
Score = 51.6 bits (118), Expect = 2e-07
Identities = 23/38 (60%), Positives = 29/38 (76%)
Frame = +2
Query: 116 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVSES*RSEV 229
+NN VLFDK TY+KL EVP+YK ITP+V+SE R +
Sbjct: 971 VNNSVLFDKATYDKLLSEVPKYKQITPSVLSERLRFSI 1008
Score = 27.5 bits (58), Expect = 3.4
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +3
Query: 255 LREKGLIKQVVQHHGQVIYTRAT 323
L +G I+ V H Q+IYTRAT
Sbjct: 1102 LESRGAIRVVSVHSSQLIYTRAT 1124
>09_06_0339 -
22400534-22400647,22401264-22401398,22401491-22401565,
22401646-22401648
Length = 108
Score = 49.6 bits (113), Expect = 7e-07
Identities = 21/32 (65%), Positives = 27/32 (84%)
Frame = +2
Query: 116 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVSE 211
+NN VLFD+ TY+KL EVP+YK ITP+V+SE
Sbjct: 37 VNNSVLFDQATYDKLLSEVPKYKQITPSVLSE 68
Score = 28.7 bits (61), Expect = 1.5
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +3
Query: 255 LREKGLIKQVVQHHGQVIYTRAT 323
L ++GLI+ V H Q IYTRAT
Sbjct: 84 LMDRGLIRMVSVHCSQQIYTRAT 106
>08_02_1576 +
27965862-27965864,27965952-27966026,27966113-27966247,
27967080-27967193
Length = 108
Score = 49.6 bits (113), Expect = 7e-07
Identities = 21/32 (65%), Positives = 27/32 (84%)
Frame = +2
Query: 116 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVSE 211
+NN VLFD+ TY+KL EVP+YK ITP+V+SE
Sbjct: 37 VNNSVLFDQATYDKLLSEVPKYKQITPSVLSE 68
Score = 28.7 bits (61), Expect = 1.5
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +3
Query: 240 KSTHRLREKGLIKQVVQHHGQVIYTRAT 323
++ + L +GLI+ V H Q IYTRAT
Sbjct: 79 RAINDLMTRGLIRMVSVHSSQQIYTRAT 106
>03_05_0586 -
25875703-25876332,25876426-25876713,25877064-25877194,
25877299-25877812
Length = 520
Score = 31.1 bits (67), Expect = 0.27
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +1
Query: 7 REGFGQTASKNTEEEGRIRWRQSQEEEVVQRKSS*QVEQPGV 132
R G G + + E G+ +WR+ +EEE Q+K + E+ V
Sbjct: 345 RGGRGGESEERRRERGKGKWREEEEEEEEQQKGQEEEEEEQV 386
>10_01_0146 - 1719997-1720386,1721498-1721515
Length = 135
Score = 29.5 bits (63), Expect = 0.83
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3
Query: 3 RTRRLRPNSLKKHRRRRKDPVAAKPRRRS 89
R ++P+ + RRRR +P +PRRR+
Sbjct: 77 RAAEMQPDDGGQRRRRRSEPATTQPRRRA 105
>06_03_1117 +
27750291-27750338,27751360-27751812,27751987-27752161,
27752227-27752551,27752705-27752786,27752820-27752889,
27753341-27753420,27753514-27753750
Length = 489
Score = 27.5 bits (58), Expect = 3.4
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +1
Query: 13 GFGQTASKNTEEEGRIRWRQSQEEEVVQRKSS*QVEQPG 129
GFG S N+ +RWR + +++ Q Q ++PG
Sbjct: 427 GFGIAISANSMLVEYLRWRSRRNQQLAQTVDDGQRQEPG 465
>04_03_0916 + 20794240-20794246,20794585-20796545
Length = 655
Score = 27.5 bits (58), Expect = 3.4
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = -1
Query: 206 IRQQV*LACTVGLPCTVSH-MWVYQTTPGCSTCHELFLWTTSSSWLCRHRI 57
I Q + L +G C + VY+ P S H+LF T+ +W R+ I
Sbjct: 399 IIQHINLVKLIGFCCEGGRRLLVYEHMPNRSLDHQLFQTNTTLTWNIRYEI 449
>10_08_1023 - 22341815-22342042,22342179-22342247,22342717-22342840,
22343193-22343317,22343815-22344276,22344357-22344700,
22345061-22345406,22345492-22345941,22346760-22347051,
22347171-22347515,22347611-22347834,22348072-22348563,
22348664-22349056,22349601-22349741,22349845-22350207,
22350494-22352683,22353298-22353360,22353434-22353535,
22353672-22354027,22354326-22354413,22354517-22354750,
22355508-22355975
Length = 2632
Score = 26.6 bits (56), Expect = 5.9
Identities = 10/18 (55%), Positives = 15/18 (83%)
Frame = +3
Query: 246 THRLREKGLIKQVVQHHG 299
TH++R + LI+QV+QH G
Sbjct: 1455 THKMRAEHLIRQVLQHLG 1472
>04_04_1699 +
35462160-35462555,35463114-35463196,35463317-35463378,
35463745-35463806,35463932-35463991,35464079-35464111,
35464196-35464261,35464349-35464393
Length = 268
Score = 26.6 bits (56), Expect = 5.9
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = +3
Query: 9 RRLRPNSLKKHRRRRKDPVAAKPRRRSGP 95
R+ P KHRR R D A PR+R P
Sbjct: 31 RQRPPPGPTKHRRLRHDADAQPPRKRGHP 59
>03_05_0559 -
25610474-25610951,25611149-25611890,25612355-25612744,
25613041-25613099,25613186-25613326,25613449-25613545,
25614999-25615185
Length = 697
Score = 26.6 bits (56), Expect = 5.9
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 6/63 (9%)
Frame = +2
Query: 173 PQYKLITPAVVSES*RSEVPWREEHSST*GKRSHQTG------SPTPWAGDLHACDQGR* 334
P YK + R + + E+H S+ H++ SP+P GD H+ + R
Sbjct: 588 PSYKTSRSSSDRRDHRRSIDYVEDHRSSDYAEDHRSSKRMRASSPSPTGGDRHSRARSRY 647
Query: 335 SSR 343
SSR
Sbjct: 648 SSR 650
>11_06_0621 +
25587476-25587604,25588230-25588423,25588800-25588874,
25589434-25591852
Length = 938
Score = 26.2 bits (55), Expect = 7.7
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -1
Query: 179 TVGLPCTVSHMWVYQTTPGCSTCHELFLWTTSSSWLCRHRILPS 48
T PC++S M V C TC+++ S +CR ++PS
Sbjct: 264 TCATPCSLSFM-VDCLIKACITCYDVQATICLFSGICRLGVVPS 306
>05_01_0049 -
337132-337488,337613-337765,337924-338551,338617-338852,
339563-339577
Length = 462
Score = 26.2 bits (55), Expect = 7.7
Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Frame = -1
Query: 119 STCHELFLWTTSSSWLCRHRILPSSSVFF--EAVWPKPSRP 3
STCH++ L S WL L S + F E VW P P
Sbjct: 261 STCHKMQLPFKLSDWLSTVPTLTSLHLDFQDEMVWILPEEP 301
>04_04_0176 - 23329589-23331043
Length = 484
Score = 26.2 bits (55), Expect = 7.7
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +1
Query: 4 GREGFGQTASKNTEEEGRIRWRQSQEEEVVQR 99
GR+GF + EE GR R R +EE +R
Sbjct: 405 GRDGFDLSRKHGHEERGRYRPRVLEEEREHER 436
>02_05_0114 + 25958834-25961296
Length = 820
Score = 26.2 bits (55), Expect = 7.7
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -1
Query: 179 TVGLPCTVSHMWVYQTTPGCSTCHELFLWTTSSSWLCRHRILPS 48
T PC++S M V C TC+++ S +CR ++PS
Sbjct: 146 TCATPCSLSFM-VDCLIKACITCYDVQATICLFSGICRLGVVPS 188
>01_06_1117 -
34633311-34634030,34634434-34634873,34635320-34635370,
34635522-34635642
Length = 443
Score = 26.2 bits (55), Expect = 7.7
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +2
Query: 170 VPQYKLITPAVVSES*RSEVPWREEHSST*GKRSHQT 280
VPQY ++P V SES +R ++ST G R+ T
Sbjct: 342 VPQYSKLSPLVPSES----ATYRNVYNSTSGSRTDPT 374
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,550,627
Number of Sequences: 37544
Number of extensions: 220795
Number of successful extensions: 690
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 690
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 554421256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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