Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1061
         (359 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41558-4|AAK39246.1|  117|Caenorhabditis elegans Ribosomal prote...    55   2e-08
Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical pr...    29   0.74 
Z81486-10|CAB03993.3|  681|Caenorhabditis elegans Hypothetical p...    29   0.74 
AF016450-6|AAB65982.1|  311|Caenorhabditis elegans Serpentine re...    27   3.9  
U80447-4|AAB37808.1|  560|Caenorhabditis elegans Temporarily ass...    27   5.2  
DQ645890-1|ABG34266.1|  560|Caenorhabditis elegans CIR-1 protein.      27   5.2  
AC084197-45|AAK68589.4|  751|Caenorhabditis elegans Hypothetical...    27   5.2  
Z83113-3|CAB05545.1|  479|Caenorhabditis elegans Hypothetical pr...    26   6.9  
Z75952-2|CAB00095.1| 1100|Caenorhabditis elegans Hypothetical pr...    26   6.9  
U52515-1|AAA97925.1| 1036|Caenorhabditis elegans hum-1 protein.        26   6.9  
AL033514-35|CAE18033.1|  106|Caenorhabditis elegans Hypothetical...    26   6.9  
Z81110-6|CAB03260.2| 1011|Caenorhabditis elegans Hypothetical pr...    26   9.1  
Z66563-2|CAA91469.3| 2557|Caenorhabditis elegans Hypothetical pr...    26   9.1  

>U41558-4|AAK39246.1|  117|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 25 protein.
          Length = 117

 Score = 54.8 bits (126), Expect = 2e-08
 Identities = 25/32 (78%), Positives = 28/32 (87%)
 Frame = +2

Query: 116 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVSE 211
           LNN VLFD+ TY+KLYKEV  YKLITP+VVSE
Sbjct: 40  LNNMVLFDQATYDKLYKEVITYKLITPSVVSE 71



 Score = 44.8 bits (101), Expect = 2e-05
 Identities = 19/31 (61%), Positives = 24/31 (77%)
 Frame = +3

Query: 255 LREKGLIKQVVQHHGQVIYTRATKGDDPVAK 347
           L+ KGL+K VV HHGQV+YTRATK  D + +
Sbjct: 87  LQAKGLVKCVVHHHGQVVYTRATKEADVIVE 117


>Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical
           protein F28D9.1 protein.
          Length = 601

 Score = 29.5 bits (63), Expect = 0.74
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = +3

Query: 3   RTRRLRPNSLKKHRRRRKDPVAAKPRRRSGPKEK 104
           R RR    S  +  RRR+ P AA PRRR  P+ +
Sbjct: 465 RRRRSPSGSKSRSPRRRRSPAAA-PRRRQSPQRR 497


>Z81486-10|CAB03993.3|  681|Caenorhabditis elegans Hypothetical
           protein C53A5.13 protein.
          Length = 681

 Score = 29.5 bits (63), Expect = 0.74
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1

Query: 1   EGREGFGQTASKNTEEEGRIRWRQSQEEEVVQRK 102
           E REG G    +   +  RIRW+   +EE+V R+
Sbjct: 25  EDREGDGVDVIEVRNDAIRIRWKHDSDEEIVTRQ 58


>AF016450-6|AAB65982.1|  311|Caenorhabditis elegans Serpentine
           receptor, class t protein67 protein.
          Length = 311

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 18/67 (26%), Positives = 32/67 (47%)
 Frame = -2

Query: 352 HSLATGSSPLVARV*ITCPWCWTTCLMRPFSLSR*VLFSPGNLGPLTFRYDSRCD*LVLW 173
           +S+    +PLV ++ + C  CW   +     +++ ++FSP + G     YD       L+
Sbjct: 123 NSMEIRITPLVVKMIVVCIVCWVLFVFIAGCITQNLMFSPPSWG-----YDFSVPYAELF 177

Query: 172 DFLVQFL 152
           D L  FL
Sbjct: 178 DMLEIFL 184


>U80447-4|AAB37808.1|  560|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 326 protein.
          Length = 560

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +3

Query: 42  RRRRKDPVAAKPRRRSGP 95
           RRR+  P+ A PRRR  P
Sbjct: 478 RRRQSSPMVASPRRRRSP 495


>DQ645890-1|ABG34266.1|  560|Caenorhabditis elegans CIR-1 protein.
          Length = 560

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +3

Query: 42  RRRRKDPVAAKPRRRSGP 95
           RRR+  P+ A PRRR  P
Sbjct: 478 RRRQSSPMVASPRRRRSP 495


>AC084197-45|AAK68589.4|  751|Caenorhabditis elegans Hypothetical
           protein Y73B6BL.1 protein.
          Length = 751

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 15/45 (33%), Positives = 18/45 (40%), Gaps = 5/45 (11%)
 Frame = -1

Query: 173 GLPCTVSHMWV-YQTTPGCS----TCHELFLWTTSSSWLCRHRIL 54
           GL    +  W  YQ    CS    TC   F W     W CR R++
Sbjct: 353 GLSNQYTDEWYEYQPVRHCSEQDATCDSPFYWCDMKLWRCRSRVV 397


>Z83113-3|CAB05545.1|  479|Caenorhabditis elegans Hypothetical
           protein K08H10.6 protein.
          Length = 479

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -2

Query: 217 LTFRYDSRCD*LVLWDFLVQFLICGFI 137
           L F YDS  D  + W FL  F++  F+
Sbjct: 363 LVFLYDSTKDSFLAWPFLALFVLFTFV 389


>Z75952-2|CAB00095.1| 1100|Caenorhabditis elegans Hypothetical
           protein F29D10.4 protein.
          Length = 1100

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -1

Query: 278 FDETFFPKSMSALLAREPRTFNFQIRQQ 195
           F +  FP++++A   + P TF+ +IR Q
Sbjct: 539 FIQALFPENVAASAGKRPTTFSTKIRTQ 566


>U52515-1|AAA97925.1| 1036|Caenorhabditis elegans hum-1 protein.
          Length = 1036

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -1

Query: 278 FDETFFPKSMSALLAREPRTFNFQIRQQ 195
           F +  FP++++A   + P TF+ +IR Q
Sbjct: 476 FIQALFPENVAASAGKRPTTFSTKIRTQ 503


>AL033514-35|CAE18033.1|  106|Caenorhabditis elegans Hypothetical
           protein Y75B8A.37 protein.
          Length = 106

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -1

Query: 44  SVFFEAVWPKPSR 6
           S+FF A+WPKP R
Sbjct: 71  SLFFVAIWPKPVR 83


>Z81110-6|CAB03260.2| 1011|Caenorhabditis elegans Hypothetical
           protein T01D3.3b protein.
          Length = 1011

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = -1

Query: 122 CSTCHELFLWTTSSSWLCRHRILPSSSVFFEAVWPKPSRP 3
           C    + F+     +  C   +LP+ S+  E   PKP RP
Sbjct: 44  CRMQDDCFIGEICDNGFCCPNVLPTFSLQREPTSPKPKRP 83


>Z66563-2|CAA91469.3| 2557|Caenorhabditis elegans Hypothetical protein
            F46C3.3 protein.
          Length = 2557

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 146  TYEKLYKEVPQYKLITPAVVSES*RSEVP 232
            +Y   Y ++PQY    P +  +S RSEVP
Sbjct: 1265 SYVPQYPQIPQYCPPEPILSPQSVRSEVP 1293


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,711,887
Number of Sequences: 27780
Number of extensions: 182270
Number of successful extensions: 591
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 591
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 492763868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)