Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1061
         (359 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g34555.1 68417.m04910 40S ribosomal protein S25, putative           47   3e-06
At2g16360.1 68415.m01872 40S ribosomal protein S25 (RPS25A)            47   3e-06
At4g39200.1 68417.m05550 40S ribosomal protein S25 (RPS25E) ribo...    47   4e-06
At2g21580.1 68415.m02567 40S ribosomal protein S25 (RPS25B)            46   6e-06
At1g14500.1 68414.m01719 ankyrin repeat family protein contains ...    29   1.2  
At2g23170.1 68415.m02768 auxin-responsive GH3 family protein sim...    27   5.0  
At1g74760.1 68414.m08662 zinc finger (C3HC4-type RING finger) fa...    27   5.0  
At1g24706.1 68414.m03104 expressed protein                             27   5.0  
At5g27640.1 68418.m03311 eukaryotic translation initiation facto...    26   6.6  
At1g48180.1 68414.m05378 expressed protein ; expression supporte...    26   6.6  
At5g38830.1 68418.m04697 tRNA synthetase class I (C) family prot...    26   8.7  
At4g36670.1 68417.m05203 mannitol transporter, putative similar ...    26   8.7  
At4g27630.1 68417.m03971 expressed protein                             26   8.7  
At2g02810.1 68415.m00226 UDP-galactose/UDP-glucose transporter c...    26   8.7  

>At4g34555.1 68417.m04910 40S ribosomal protein S25, putative
          Length = 108

 Score = 47.2 bits (107), Expect = 3e-06
 Identities = 18/32 (56%), Positives = 27/32 (84%)
 Frame = +2

Query: 116 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVSE 211
           +NN VLFD+ TY+KL  E P++KLITP+++S+
Sbjct: 37  VNNMVLFDQATYDKLLSEAPKFKLITPSILSD 68



 Score = 30.7 bits (66), Expect = 0.30
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +3

Query: 240 KSTHRLREKGLIKQVVQHHGQVIYTRATKG 329
           ++   L  KG I+ V  H  Q IYTRAT G
Sbjct: 79  RAIRELMAKGTIRMVSAHSSQQIYTRATHG 108


>At2g16360.1 68415.m01872 40S ribosomal protein S25 (RPS25A) 
          Length = 125

 Score = 47.2 bits (107), Expect = 3e-06
 Identities = 18/32 (56%), Positives = 27/32 (84%)
 Frame = +2

Query: 116 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVSE 211
           +NN VLFD+ TY+KL  E P++KLITP+++S+
Sbjct: 53  VNNMVLFDQATYDKLMSEAPKFKLITPSILSD 84


>At4g39200.1 68417.m05550 40S ribosomal protein S25 (RPS25E)
           ribosomal protein S25, Lycopersicon esculentum,
           PIR2:S40089
          Length = 108

 Score = 46.8 bits (106), Expect = 4e-06
 Identities = 18/32 (56%), Positives = 27/32 (84%)
 Frame = +2

Query: 116 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVSE 211
           +NN VLFD+ TY+KL  E P++KLITP+++S+
Sbjct: 37  VNNMVLFDQATYDKLLTEAPKFKLITPSILSD 68



 Score = 30.3 bits (65), Expect = 0.40
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +3

Query: 240 KSTHRLREKGLIKQVVQHHGQVIYTRAT 323
           ++   L  KG+I+ V  H  Q IYTRAT
Sbjct: 79  RAIRELMAKGVIRMVAAHSSQQIYTRAT 106


>At2g21580.1 68415.m02567 40S ribosomal protein S25 (RPS25B)
          Length = 108

 Score = 46.4 bits (105), Expect = 6e-06
 Identities = 18/32 (56%), Positives = 27/32 (84%)
 Frame = +2

Query: 116 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVSE 211
           +NN VLFD+ TY+KL  E P++KLITP+++S+
Sbjct: 37  VNNMVLFDQGTYDKLLTEAPKFKLITPSILSD 68



 Score = 30.7 bits (66), Expect = 0.30
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +3

Query: 240 KSTHRLREKGLIKQVVQHHGQVIYTRAT 323
           ++   L  KGLI+ V  H  Q IYTRAT
Sbjct: 79  RAIRELMAKGLIRMVSAHSSQQIYTRAT 106


>At1g14500.1 68414.m01719 ankyrin repeat family protein contains
           Pfam domain, PF00023: Ankyrin repeat
          Length = 436

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 12/49 (24%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = -3

Query: 180 YCGTSLYSFSYVGLSN--NTWLFNLSRTFPLDHFFFLALPPPDPSFFFC 40
           +C   LY+F  + + +   TW F +  +  + +   +A+  P+P  F C
Sbjct: 342 FCCALLYTFCLLPIGSLFTTWFFWIGASLGVSYALAMAIISPNPLLFLC 390


>At2g23170.1 68415.m02768 auxin-responsive GH3 family protein
           similar to auxin-responsive GH3 product [Glycine max]
           GI:18591; contains Pfam profile PF03321: GH3
           auxin-responsive promoter
          Length = 595

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -2

Query: 154 LICGFIKQHLVVQLVTNFSFGPLLLLGFAAT 62
           ++CG + +H V++L   F+ G L  +GF  T
Sbjct: 213 MLCGLLMRHEVLRLGAVFASGLLRAIGFLQT 243


>At1g74760.1 68414.m08662 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam domain PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 255

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 18/63 (28%), Positives = 26/63 (41%)
 Frame = -1

Query: 299 PMVLDYLFDETFFPKSMSALLAREPRTFNFQIRQQV*LACTVGLPCTVSHMWVYQTTPGC 120
           P+    L D   + K + ALLA E     +  + QV L    G      + W+Y     C
Sbjct: 188 PVCSKSLGDMQVYFKMLDALLAEEKMPDEYSNKTQVILCNDCGRKGNAPYHWLYHK---C 244

Query: 119 STC 111
           +TC
Sbjct: 245 TTC 247


>At1g24706.1 68414.m03104 expressed protein
          Length = 1781

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 117  NLSRTFPLDHFFFLALPPPDP 55
            +L ++ P DHF    LPPP P
Sbjct: 1562 SLEKSHPDDHFHSQGLPPPPP 1582


>At5g27640.1 68418.m03311 eukaryotic translation initiation factor 3
           subunit 9 / eIF-3 eta / eIF3b (TIF3B1) nearly identical
           to SP|Q9C5Z1 Eukaryotic translation initiation factor 3
           subunit 9 (eIF-3 eta) (eIF3 p110) (eIF3b) {Arabidopsis
           thaliana}
          Length = 712

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 20/71 (28%), Positives = 27/71 (38%), Gaps = 2/71 (2%)
 Frame = -3

Query: 255 VDECSSRQGTSDL*LSDTTAGVISLYCGTSLYSFSYVGLSNNTWLFNLSRTFPL--DHFF 82
           VDE  +         +D        Y  T++ S   +      W FN    + +  DHFF
Sbjct: 541 VDELETMATAEHFMATDIEWDPTGRYVATAVTSVHEMENGFTIWSFNGIMLYRILKDHFF 600

Query: 81  FLALPPPDPSF 49
            LA  P  PSF
Sbjct: 601 QLAWRPRPPSF 611


>At1g48180.1 68414.m05378 expressed protein ; expression supported
           by MPSS
          Length = 239

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -3

Query: 213 LSDTTAGVISLYCGTSLYSFSYVGL 139
           L    + +  +YCGTS    SYVGL
Sbjct: 149 LQQDASAITGIYCGTSGEPASYVGL 173


>At5g38830.1 68418.m04697 tRNA synthetase class I (C) family protein
           similar to SP|Q06752 Cysteinyl-tRNA synthetase (EC
           6.1.1.16) (Cysteine--tRNA ligase) (CysRS) {Bacillus
           subtilis}; contains Pfam profile PF01406: tRNA
           synthetases class I (C)
          Length = 511

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 11/21 (52%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
 Frame = -3

Query: 201 TAGVISLY-CGTSLYSFSYVG 142
           T G I LY CG + Y FS++G
Sbjct: 25  TPGKIGLYVCGITAYDFSHIG 45


>At4g36670.1 68417.m05203 mannitol transporter, putative similar to
           mannitol transporter [Apium graveolens var. dulce]
           GI:12004316; contains Pfam profile PF00083: major
           facilitator superfamily protein
          Length = 493

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -3

Query: 192 VISLYCGTSLYSFSYVGLSNNTWLFNLSRTFPL 94
           V+S+    S  +F  +GL   TW+++ S  FPL
Sbjct: 377 VLSIVAAYSFVAFFSIGLGPITWVYS-SEVFPL 408


>At4g27630.1 68417.m03971 expressed protein
          Length = 348

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -2

Query: 307 ITCPWCWTTCLMRPFSL 257
           I  P CWTT L  PF L
Sbjct: 4   ILSPTCWTTLLKHPFIL 20


>At2g02810.1 68415.m00226 UDP-galactose/UDP-glucose transporter
           contains  transmembrane domains; identical to
           UDP-galactose/UDP-glucose transporter (GI:22651763)
           [Arabidopsis thaliana] similar to UGTrel1 (GI:1669564)
           [Rattus rattus]; identical to cDNA
           UDP-galactose/UDP-glucose transporter GI:22651762
          Length = 332

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -2

Query: 175 WDFLVQFLICGFIKQHLVVQLVTNF 101
           WD L ++ ICG + Q+ +   ++NF
Sbjct: 245 WDIL-KYCICGAVGQNFIFMTISNF 268


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,292,218
Number of Sequences: 28952
Number of extensions: 170904
Number of successful extensions: 533
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 533
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 469342752
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)