Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1060
         (399 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q1HQB9 Cluster: Nucleosome assembly protein isoform 1; ...    93   2e-18
UniRef50_Q9U602 Cluster: Putative nucleosome binding protein; n=...    36   0.22 
UniRef50_P55209 Cluster: Nucleosome assembly protein 1-like 1; n...    36   0.39 
UniRef50_A6WCQ6 Cluster: Putative uncharacterized protein; n=1; ...    31   6.3  

>UniRef50_Q1HQB9 Cluster: Nucleosome assembly protein isoform 1;
           n=7; Coelomata|Rep: Nucleosome assembly protein isoform
           1 - Bombyx mori (Silk moth)
          Length = 395

 Score = 93.1 bits (221), Expect = 2e-18
 Identities = 47/63 (74%), Positives = 47/63 (74%)
 Frame = +3

Query: 33  MGTVERSGDDHTXXXXXXXXXXXXXXXXLAQHLLKSGVTRNEMIAAITNRLHAEAMASLP 212
           MGTVERSGDDHT                LAQHLLKSGVTRNEMIAAITNRLHAEAMASLP
Sbjct: 1   MGTVERSGDDHTSEMESAEEEEVVGSGELAQHLLKSGVTRNEMIAAITNRLHAEAMASLP 60

Query: 213 PNV 221
           PNV
Sbjct: 61  PNV 63



 Score = 62.1 bits (144), Expect = 4e-09
 Identities = 31/53 (58%), Positives = 32/53 (60%)
 Frame = +2

Query: 239 LENSSEEFVXIEAKFYSEVHAXXXXXXXXXXXXXXXRALIVXGTYEPNDDECL 397
           L    +EFV IEAKFYSEVHA               RALIV GTYEPNDDECL
Sbjct: 70  LRTLQKEFVDIEAKFYSEVHALECKYEKLYKPLYEKRALIVNGTYEPNDDECL 122


>UniRef50_Q9U602 Cluster: Putative nucleosome binding protein; n=1;
           Anisakis simplex|Rep: Putative nucleosome binding
           protein - Anisakis simplex (Herring worm)
          Length = 321

 Score = 36.3 bits (80), Expect = 0.22
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = +2

Query: 257 EFVXIEAKFYSEVHAXXXXXXXXXXXXXXXRALIVXGTYEPNDDEC 394
           E + +EAKFY+ VH                R  IV G +EP D+EC
Sbjct: 36  EGIHVEAKFYARVHQLEKEFAPMFDALHEKRKEIVTGEHEPTDEEC 81


>UniRef50_P55209 Cluster: Nucleosome assembly protein 1-like 1;
           n=90; Eumetazoa|Rep: Nucleosome assembly protein 1-like
           1 - Homo sapiens (Human)
          Length = 391

 Score = 35.5 bits (78), Expect = 0.39
 Identities = 18/52 (34%), Positives = 23/52 (44%)
 Frame = +2

Query: 239 LENSSEEFVXIEAKFYSEVHAXXXXXXXXXXXXXXXRALIVXGTYEPNDDEC 394
           L+N   +   IEAKFY EVH                R  I+   YEP ++EC
Sbjct: 81  LKNLQVKCAQIEAKFYEEVHDLERKYAVLYQPLFDKRFEIINAIYEPTEEEC 132


>UniRef50_A6WCQ6 Cluster: Putative uncharacterized protein; n=1;
           Kineococcus radiotolerans SRS30216|Rep: Putative
           uncharacterized protein - Kineococcus radiotolerans
           SRS30216
          Length = 77

 Score = 31.5 bits (68), Expect = 6.3
 Identities = 18/36 (50%), Positives = 22/36 (61%)
 Frame = -3

Query: 250 RVLKARIRRRTFGGRDAIASA*RRFVMAAIISLRVT 143
           R+L AR RR    GRDA ASA    V+AAI+ +  T
Sbjct: 13  RLLSARARRAAASGRDAGASALEWAVIAAIVVVAAT 48


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 331,925,173
Number of Sequences: 1657284
Number of extensions: 5344559
Number of successful extensions: 10487
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10308
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10484
length of database: 575,637,011
effective HSP length: 92
effective length of database: 423,166,883
effective search space used: 16926675320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)