Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1060
         (399 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0109 + 853043-853426,853653-853787,853866-854138                 28   2.4  
03_02_0764 + 10990220-10992410,10992809-10993616,10994734-109949...    27   4.1  
08_01_0695 + 6148873-6150051                                           27   7.2  
07_03_0538 + 19231318-19231382,19231652-19232390,19232468-192325...    26   9.5  

>12_01_0109 + 853043-853426,853653-853787,853866-854138
          Length = 263

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = -1

Query: 207 GMPSLLHEGDL*WPLSFHYGSRHFSTGVALVHHFXXXXXXLQTP 76
           G+P L   GD+ + L+F  G+ H  T VAL   F       Q+P
Sbjct: 129 GVPDLSEHGDV-YDLTFGLGADHPPTAVALRKEFQRIILYQQSP 171


>03_02_0764 +
           10990220-10992410,10992809-10993616,10994734-10994968,
           10995028-10995169,10997365-10997444,10997636-10997776
          Length = 1198

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +2

Query: 164 SGHHKSPSCRSDGIPTPECSSANPRLENSSEEFVXIEAKF 283
           S HH  PS  S  +P P    A+ RL  +    V +E  F
Sbjct: 147 SPHHSVPSLDSSAVPPPVSLGADARLLFAPSSAVLLERAF 186


>08_01_0695 + 6148873-6150051
          Length = 392

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 11/21 (52%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
 Frame = +2

Query: 182 PSCRSDGIPTPECSSA-NPRL 241
           PSCR+ G  +P C++A +PRL
Sbjct: 65  PSCRAAGFCSPSCAAASHPRL 85


>07_03_0538 +
           19231318-19231382,19231652-19232390,19232468-19232516,
           19232600-19232664,19232774-19232828,19234107-19234225,
           19234346-19234412,19235316-19235437,19235521-19235790
          Length = 516

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +2

Query: 161 DSGHHKSPSCRSDGIPTPECSSANPRLENSSEEFVXIE 274
           D   ++S  C  D   TP   S+  R E++ EE++  E
Sbjct: 295 DGTINQSLPCTKDNAKTPRIQSSEDRSESTEEEYLPEE 332


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,234,322
Number of Sequences: 37544
Number of extensions: 154689
Number of successful extensions: 303
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 303
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)